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Mutant Information

Mutant Name	FN1761-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1761-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 20622861 T-A Homo UTR_3_PRIME
SBS Chr1 21262741 G-T Homo UTR_3_PRIME
SBS Chr1 29467214 T-A Homo INTERGENIC
SBS Chr1 34305382 C-G Hetero INTERGENIC
SBS Chr2 11430268 G-C Homo INTERGENIC
SBS Chr2 19610098 T-C Homo INTERGENIC
SBS Chr2 29623066 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g299300
SBS Chr3 13659546 C-T Homo INTERGENIC
SBS Chr3 23286990 T-G Hetero INTERGENIC
SBS Chr3 25426690 G-A Hetero INTERGENIC
SBS Chr3 28997972 C-T Hetero INTERGENIC
SBS Chr3 35779099 C-T Hetero INTERGENIC
SBS Chr3 35779105 C-T Hetero INTERGENIC
SBS Chr4 16094197 A-G Hetero INTERGENIC
SBS Chr4 22027876 T-A Hetero INTERGENIC
SBS Chr5 1274897 T-A Homo INTERGENIC
SBS Chr5 3348204 A-T Homo INTERGENIC
SBS Chr6 4384312 G-A Hetero INTERGENIC
SBS Chr6 19382869 A-G Hetero INTERGENIC
SBS Chr7 1570665 C-T Hetero INTERGENIC
SBS Chr7 7932830 G-A Hetero INTERGENIC
SBS Chr7 20827585 C-T Homo INTERGENIC
SBS Chr7 24181605 T-G Hetero INTERGENIC
SBS Chr7 25889530 G-A Hetero INTERGENIC
SBS Chr9 21049804 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake09g180901
SBS Chr9 21583686 C-T Hetero INTERGENIC
SBS Chr9 21977798 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g195900
SBS Chr9 21977800 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g195900
SBS Chr10 20874542 A-T Homo INTERGENIC
SBS Chr11 13459740 A-G Homo INTERGENIC
SBS Chr12 12272924 G-T Hetero INTERGENIC
SBS Chr12 12891206 T-C Hetero INTERGENIC
SBS Chr12 21085287 G-A Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 1870791 1870792 1 OsKitaake10g014200
Deletion Chr2 2669499 2669501 2
Deletion Chr8 5400918 5400919 1
Deletion Chr6 6302011 6302012 1
Deletion Chr1 10973944 10973945 1
Deletion Chr8 13542963 13542969 6
Deletion Chr6 14445001 14855000 409999 17
Deletion Chr12 14586932 14586933 1 OsKitaake12g116800
Deletion Chr6 14859001 14924000 64999 5
Deletion Chr6 15451001 15638000 186999 3
Deletion Chr5 16055079 16055081 2

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 8641744 8641747 2
Insertion Chr7 16897191 16897194 2
Insertion Chr3 32330345 32330347 1
Insertion Chr5 29939081 29939084 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 23123497 23220266
Inversion Chr4 23123500 23220264

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 11144482 Chr3 23745569 OsKitaake06g123600
Translocation Chr6 11144579 Chr3 23745470 OsKitaake06g123600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20622861	T-A	Homo	UTR_3_PRIME
SBS	Chr1	21262741	G-T	Homo	UTR_3_PRIME
SBS	Chr1	29467214	T-A	Homo	INTERGENIC
SBS	Chr1	34305382	C-G	Hetero	INTERGENIC
SBS	Chr2	11430268	G-C	Homo	INTERGENIC
SBS	Chr2	19610098	T-C	Homo	INTERGENIC
SBS	Chr2	29623066	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g299300
SBS	Chr3	13659546	C-T	Homo	INTERGENIC
SBS	Chr3	23286990	T-G	Hetero	INTERGENIC
SBS	Chr3	25426690	G-A	Hetero	INTERGENIC
SBS	Chr3	28997972	C-T	Hetero	INTERGENIC
SBS	Chr3	35779099	C-T	Hetero	INTERGENIC
SBS	Chr3	35779105	C-T	Hetero	INTERGENIC
SBS	Chr4	16094197	A-G	Hetero	INTERGENIC
SBS	Chr4	22027876	T-A	Hetero	INTERGENIC
SBS	Chr5	1274897	T-A	Homo	INTERGENIC
SBS	Chr5	3348204	A-T	Homo	INTERGENIC
SBS	Chr6	4384312	G-A	Hetero	INTERGENIC
SBS	Chr6	19382869	A-G	Hetero	INTERGENIC
SBS	Chr7	1570665	C-T	Hetero	INTERGENIC
SBS	Chr7	7932830	G-A	Hetero	INTERGENIC
SBS	Chr7	20827585	C-T	Homo	INTERGENIC
SBS	Chr7	24181605	T-G	Hetero	INTERGENIC
SBS	Chr7	25889530	G-A	Hetero	INTERGENIC
SBS	Chr9	21049804	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g180901
SBS	Chr9	21583686	C-T	Hetero	INTERGENIC
SBS	Chr9	21977798	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g195900
SBS	Chr9	21977800	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g195900
SBS	Chr10	20874542	A-T	Homo	INTERGENIC
SBS	Chr11	13459740	A-G	Homo	INTERGENIC
SBS	Chr12	12272924	G-T	Hetero	INTERGENIC
SBS	Chr12	12891206	T-C	Hetero	INTERGENIC
SBS	Chr12	21085287	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	1870791	1870792	1	OsKitaake10g014200
Deletion	Chr2	2669499	2669501	2
Deletion	Chr8	5400918	5400919	1
Deletion	Chr6	6302011	6302012	1
Deletion	Chr1	10973944	10973945	1
Deletion	Chr8	13542963	13542969	6
Deletion	Chr6	14445001	14855000	409999	17
Deletion	Chr12	14586932	14586933	1	OsKitaake12g116800
Deletion	Chr6	14859001	14924000	64999	5
Deletion	Chr6	15451001	15638000	186999	3
Deletion	Chr5	16055079	16055081	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	23123497	23220266
Inversion	Chr4	23123500	23220264

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes