Search Kitaake

Mutant Information

Mutant Name	FN1762-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1762-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 25

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3994610 T-A Hetero INTERGENIC
SBS Chr1 4257293 A-G Hetero UTR_3_PRIME
SBS Chr1 10365795 C-A Homo INTRON
SBS Chr2 15549606 T-G Hetero INTERGENIC
SBS Chr2 36333672 A-G Homo NON_SYNONYMOUS_CODING OsKitaake02g384800
SBS Chr3 22837136 G-A Hetero INTERGENIC
SBS Chr3 35819627 G-A Hetero INTERGENIC
SBS Chr4 11371932 G-A Hetero INTERGENIC
SBS Chr4 16599055 G-A Hetero INTERGENIC
SBS Chr4 21499311 G-A Hetero INTERGENIC
SBS Chr4 34513041 G-A Homo INTERGENIC
SBS Chr4 34703406 G-A Homo INTRON
SBS Chr5 8987936 G-T Homo INTERGENIC
SBS Chr6 30169786 T-A Hetero INTERGENIC
SBS Chr7 18962695 A-G Hetero INTERGENIC
SBS Chr8 21994974 G-A Hetero INTERGENIC
SBS Chr9 13288492 G-A Hetero INTERGENIC
SBS Chr9 17768870 C-G Hetero INTERGENIC
SBS Chr9 19699853 G-A Hetero INTERGENIC
SBS Chr10 23317763 T-A Homo INTERGENIC
SBS Chr11 4107509 G-C Homo INTERGENIC
SBS Chr11 10295309 T-G Hetero INTERGENIC
SBS Chr11 10804561 C-G Homo INTERGENIC
SBS Chr12 117360 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g001100
SBS Chr12 265667 G-C Homo INTRON

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 682001 1327000 644999 107
Deletion Chr3 6164749 6164758 9
Deletion Chr5 8115178 8115179 1
Deletion Chr5 9520683 9520687 4
Deletion Chr12 13759422 13759429 7
Deletion Chr1 17189332 17189497 165
Deletion Chr10 21234268 21234270 2
Deletion Chr1 21731106 21731116 10 OsKitaake01g209766
Deletion Chr8 23640520 23640521 1
Deletion Chr3 30393783 30393793 10
Deletion Chr4 34224505 34224506 1

Insertions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 10343054 10343057 2
Insertion Chr1 23212385 23212387 1
Insertion Chr1 41346756 41346759 2
Insertion Chr4 26477610 26477613 2
Insertion Chr5 176980 176987 6
Insertion Chr7 4717001 4717004 2
Insertion Chr7 16778651 16778654 2
Insertion Chr8 5193334 5193337 2
Insertion Chr9 11893551 11893554 2
Insertion Chr11 18907156 18907160 3

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 26736542 26755394 OsKitaake08g216400
Inversion Chr8 26736557 26755399 OsKitaake08g216400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3994610	T-A	Hetero	INTERGENIC
SBS	Chr1	4257293	A-G	Hetero	UTR_3_PRIME
SBS	Chr1	10365795	C-A	Homo	INTRON
SBS	Chr2	15549606	T-G	Hetero	INTERGENIC
SBS	Chr2	36333672	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g384800
SBS	Chr3	22837136	G-A	Hetero	INTERGENIC
SBS	Chr3	35819627	G-A	Hetero	INTERGENIC
SBS	Chr4	11371932	G-A	Hetero	INTERGENIC
SBS	Chr4	16599055	G-A	Hetero	INTERGENIC
SBS	Chr4	21499311	G-A	Hetero	INTERGENIC
SBS	Chr4	34513041	G-A	Homo	INTERGENIC
SBS	Chr4	34703406	G-A	Homo	INTRON
SBS	Chr5	8987936	G-T	Homo	INTERGENIC
SBS	Chr6	30169786	T-A	Hetero	INTERGENIC
SBS	Chr7	18962695	A-G	Hetero	INTERGENIC
SBS	Chr8	21994974	G-A	Hetero	INTERGENIC
SBS	Chr9	13288492	G-A	Hetero	INTERGENIC
SBS	Chr9	17768870	C-G	Hetero	INTERGENIC
SBS	Chr9	19699853	G-A	Hetero	INTERGENIC
SBS	Chr10	23317763	T-A	Homo	INTERGENIC
SBS	Chr11	4107509	G-C	Homo	INTERGENIC
SBS	Chr11	10295309	T-G	Hetero	INTERGENIC
SBS	Chr11	10804561	C-G	Homo	INTERGENIC
SBS	Chr12	117360	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g001100
SBS	Chr12	265667	G-C	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	682001	1327000	644999	107
Deletion	Chr3	6164749	6164758	9
Deletion	Chr5	8115178	8115179	1
Deletion	Chr5	9520683	9520687	4
Deletion	Chr12	13759422	13759429	7
Deletion	Chr1	17189332	17189497	165
Deletion	Chr10	21234268	21234270	2
Deletion	Chr1	21731106	21731116	10	OsKitaake01g209766
Deletion	Chr8	23640520	23640521	1
Deletion	Chr3	30393783	30393793	10
Deletion	Chr4	34224505	34224506	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	26736542	26755394	OsKitaake08g216400
Inversion	Chr8	26736557	26755399	OsKitaake08g216400

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes