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Mutant Information

Mutant Name	FN1763-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1763-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 27

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 286165 G-A Hetero INTRON
SBS Chr1 19391388 A-T Homo INTERGENIC
SBS Chr1 25582034 G-A Homo INTERGENIC
SBS Chr1 34907607 G-A Hetero INTERGENIC
SBS Chr1 44165630 A-G Homo INTERGENIC
SBS Chr2 5698297 G-A Homo INTRON
SBS Chr2 7085512 T-C Homo INTERGENIC
SBS Chr3 17463612 G-A Homo INTERGENIC
SBS Chr3 27309841 C-G Homo INTERGENIC
SBS Chr4 9214150 C-T Homo INTRON
SBS Chr5 7344643 C-T Hetero INTERGENIC
SBS Chr5 14281507 G-T Homo INTERGENIC
SBS Chr6 17812048 G-T Homo INTERGENIC
SBS Chr6 25568125 A-G Hetero INTERGENIC
SBS Chr6 26015206 C-T Hetero INTERGENIC
SBS Chr8 12168211 C-T Hetero INTERGENIC
SBS Chr8 12189373 T-G Hetero INTERGENIC
SBS Chr8 16637853 C-T Hetero INTERGENIC
SBS Chr8 21835189 G-C Hetero INTERGENIC
SBS Chr9 15752325 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake09g112100
SBS Chr9 16947117 A-T Hetero INTERGENIC
SBS Chr10 6797879 G-A Hetero INTERGENIC
SBS Chr10 8969755 C-T Homo INTERGENIC
SBS Chr10 13120584 A-C Homo INTERGENIC
SBS Chr11 20313152 C-T Hetero INTRON
SBS Chr12 3569849 G-T Hetero INTERGENIC
SBS Chr12 6059316 G-A Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 130528 130531 3
Deletion Chr8 1645760 1645762 2
Deletion Chr8 4149445 4149446 1
Deletion Chr6 4739289 4739292 3
Deletion Chr11 10549957 10549962 5
Deletion Chr2 10594448 10594449 1
Deletion Chr10 12378275 12378279 4
Deletion Chr12 15184513 15184516 3
Deletion Chr2 25009685 25009767 82
Deletion Chr7 26080246 26080247 1
Deletion Chr2 28347798 28347800 2

Inversions: 8

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 14453101 14624439
Inversion Chr2 14453111 14624442
Inversion Chr11 21927510 22456752
Inversion Chr11 21935793 22456769
Inversion Chr12 25130270 25325214 OsKitaake12g207000
Inversion Chr12 25130291 25325224 OsKitaake12g207000
Inversion Chr5 27335951 27414263 2
Inversion Chr5 27335956 27416271 OsKitaake05g247500

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 21927643 Chr6 26408369
Translocation Chr11 21935790 Chr6 26408366
Translocation Chr7 29624333 Chr5 27416265
Translocation Chr7 29624337 Chr5 27414264 OsKitaake05g248600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	286165	G-A	Hetero	INTRON
SBS	Chr1	19391388	A-T	Homo	INTERGENIC
SBS	Chr1	25582034	G-A	Homo	INTERGENIC
SBS	Chr1	34907607	G-A	Hetero	INTERGENIC
SBS	Chr1	44165630	A-G	Homo	INTERGENIC
SBS	Chr2	5698297	G-A	Homo	INTRON
SBS	Chr2	7085512	T-C	Homo	INTERGENIC
SBS	Chr3	17463612	G-A	Homo	INTERGENIC
SBS	Chr3	27309841	C-G	Homo	INTERGENIC
SBS	Chr4	9214150	C-T	Homo	INTRON
SBS	Chr5	7344643	C-T	Hetero	INTERGENIC
SBS	Chr5	14281507	G-T	Homo	INTERGENIC
SBS	Chr6	17812048	G-T	Homo	INTERGENIC
SBS	Chr6	25568125	A-G	Hetero	INTERGENIC
SBS	Chr6	26015206	C-T	Hetero	INTERGENIC
SBS	Chr8	12168211	C-T	Hetero	INTERGENIC
SBS	Chr8	12189373	T-G	Hetero	INTERGENIC
SBS	Chr8	16637853	C-T	Hetero	INTERGENIC
SBS	Chr8	21835189	G-C	Hetero	INTERGENIC
SBS	Chr9	15752325	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g112100
SBS	Chr9	16947117	A-T	Hetero	INTERGENIC
SBS	Chr10	6797879	G-A	Hetero	INTERGENIC
SBS	Chr10	8969755	C-T	Homo	INTERGENIC
SBS	Chr10	13120584	A-C	Homo	INTERGENIC
SBS	Chr11	20313152	C-T	Hetero	INTRON
SBS	Chr12	3569849	G-T	Hetero	INTERGENIC
SBS	Chr12	6059316	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	130528	130531	3
Deletion	Chr8	1645760	1645762	2
Deletion	Chr8	4149445	4149446	1
Deletion	Chr6	4739289	4739292	3
Deletion	Chr11	10549957	10549962	5
Deletion	Chr2	10594448	10594449	1
Deletion	Chr10	12378275	12378279	4
Deletion	Chr12	15184513	15184516	3
Deletion	Chr2	25009685	25009767	82
Deletion	Chr7	26080246	26080247	1
Deletion	Chr2	28347798	28347800	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	14453101	14624439
Inversion	Chr2	14453111	14624442
Inversion	Chr11	21927510	22456752
Inversion	Chr11	21935793	22456769
Inversion	Chr12	25130270	25325214	OsKitaake12g207000
Inversion	Chr12	25130291	25325224	OsKitaake12g207000
Inversion	Chr5	27335951	27414263	2
Inversion	Chr5	27335956	27416271	OsKitaake05g247500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes