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Mutant Information

Mutant Name	FN1764-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1764-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 24

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 34086527 T-C Homo NON_SYNONYMOUS_CODING OsKitaake01g351400
SBS Chr1 42673662 C-T Homo INTERGENIC
SBS Chr2 10921086 G-A Hetero INTERGENIC
SBS Chr2 17906524 G-A Hetero INTERGENIC
SBS Chr2 29496043 T-A Hetero INTRON
SBS Chr2 29496044 G-A Hetero INTRON
SBS Chr3 16428973 T-C Hetero INTRON
SBS Chr3 18664124 A-G Hetero INTERGENIC
SBS Chr4 3392081 G-T Hetero INTERGENIC
SBS Chr4 13855078 A-G Hetero INTERGENIC
SBS Chr5 1266758 G-A Hetero INTRON
SBS Chr5 1640558 A-G Hetero INTERGENIC
SBS Chr6 11622591 G-C Hetero INTERGENIC
SBS Chr6 14011667 T-A Hetero INTRON
SBS Chr6 28503369 C-T Hetero INTERGENIC
SBS Chr7 4128294 G-A Homo INTERGENIC
SBS Chr7 22972481 G-A Hetero INTERGENIC
SBS Chr8 6301924 A-T Hetero UTR_3_PRIME
SBS Chr8 10961765 C-T Hetero INTERGENIC
SBS Chr8 22614134 G-C Homo NON_SYNONYMOUS_CODING OsKitaake08g173400
SBS Chr10 14231430 T-A Hetero INTERGENIC
SBS Chr10 14231431 G-A Hetero INTERGENIC
SBS Chr10 14275758 G-T Hetero INTERGENIC
SBS Chr12 1344877 A-G Hetero INTERGENIC

Deletions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 7811084 7811092 8
Deletion Chr4 9744805 9744808 3
Deletion Chr1 26588174 26588175 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 5358947 5358950 2
Insertion Chr3 6209644 6209649 4

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 14048399 14276588
Inversion Chr1 25528445 26290798
Inversion Chr1 25528494 26290803

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 14048398 Chr1 35771625
Translocation Chr10 14276374 Chr1 35771222
Translocation Chr10 14276390 Chr1 35842792 OsKitaake01g379900
Translocation Chr10 14276557 Chr1 35521677 OsKitaake01g375700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	34086527	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g351400
SBS	Chr1	42673662	C-T	Homo	INTERGENIC
SBS	Chr2	10921086	G-A	Hetero	INTERGENIC
SBS	Chr2	17906524	G-A	Hetero	INTERGENIC
SBS	Chr2	29496043	T-A	Hetero	INTRON
SBS	Chr2	29496044	G-A	Hetero	INTRON
SBS	Chr3	16428973	T-C	Hetero	INTRON
SBS	Chr3	18664124	A-G	Hetero	INTERGENIC
SBS	Chr4	3392081	G-T	Hetero	INTERGENIC
SBS	Chr4	13855078	A-G	Hetero	INTERGENIC
SBS	Chr5	1266758	G-A	Hetero	INTRON
SBS	Chr5	1640558	A-G	Hetero	INTERGENIC
SBS	Chr6	11622591	G-C	Hetero	INTERGENIC
SBS	Chr6	14011667	T-A	Hetero	INTRON
SBS	Chr6	28503369	C-T	Hetero	INTERGENIC
SBS	Chr7	4128294	G-A	Homo	INTERGENIC
SBS	Chr7	22972481	G-A	Hetero	INTERGENIC
SBS	Chr8	6301924	A-T	Hetero	UTR_3_PRIME
SBS	Chr8	10961765	C-T	Hetero	INTERGENIC
SBS	Chr8	22614134	G-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g173400
SBS	Chr10	14231430	T-A	Hetero	INTERGENIC
SBS	Chr10	14231431	G-A	Hetero	INTERGENIC
SBS	Chr10	14275758	G-T	Hetero	INTERGENIC
SBS	Chr12	1344877	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	7811084	7811092	8
Deletion	Chr4	9744805	9744808	3
Deletion	Chr1	26588174	26588175	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	14048399	14276588
Inversion	Chr1	25528445	26290798
Inversion	Chr1	25528494	26290803

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes