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Mutant Information

Mutant Name	FN2080-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2080-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 48

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5530914 T-A Homo INTRON
SBS Chr1 13442632 G-C Hetero INTERGENIC
SBS Chr1 32184012 T-G Hetero INTERGENIC
SBS Chr1 32978674 T-C Hetero INTERGENIC
SBS Chr1 40568590 A-C Hetero INTERGENIC
SBS Chr2 4601361 G-A Hetero START_GAINED
SBS Chr2 4654985 A-G Hetero INTERGENIC
SBS Chr2 6864754 C-A Hetero INTERGENIC
SBS Chr2 12868640 C-T Hetero INTERGENIC
SBS Chr2 14471699 T-C Hetero INTERGENIC
SBS Chr3 8092262 T-A Hetero UTR_3_PRIME
SBS Chr3 16566394 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g209400
SBS Chr4 7063892 G-A Hetero INTERGENIC
SBS Chr4 7063893 T-A Hetero INTERGENIC
SBS Chr4 7762120 G-C Hetero UTR_5_PRIME
SBS Chr4 10078200 G-A Hetero SYNONYMOUS_CODING
SBS Chr4 10078201 A-C Hetero SYNONYMOUS_CODING
SBS Chr4 16611350 G-C Hetero INTRON
SBS Chr4 17795246 T-G Hetero INTERGENIC
SBS Chr5 628299 G-A Homo INTERGENIC
SBS Chr5 20610674 T-A Hetero INTERGENIC
SBS Chr5 26448118 T-C Hetero INTERGENIC
SBS Chr6 15968169 T-C Hetero INTERGENIC
SBS Chr6 20311039 G-A Hetero SYNONYMOUS_CODING
SBS Chr6 24815357 T-C Hetero INTERGENIC
SBS Chr7 6844432 C-A Hetero INTERGENIC
SBS Chr7 8219047 C-G Hetero INTERGENIC
SBS Chr7 10764788 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake07g102501
SBS Chr7 13450427 C-T Hetero INTERGENIC
SBS Chr7 16348046 T-C Homo INTERGENIC
SBS Chr7 18593008 T-A Homo INTERGENIC
SBS Chr7 19351680 C-T Homo INTERGENIC
SBS Chr7 19640259 A-T Homo INTERGENIC
SBS Chr9 3180912 G-A Hetero INTERGENIC
SBS Chr9 6862516 A-G Homo INTERGENIC
SBS Chr9 7995671 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g045100
SBS Chr9 10777823 T-A Hetero INTERGENIC
SBS Chr9 21974935 C-A Hetero INTRON
SBS Chr10 2718196 A-G Homo INTRON
SBS Chr11 6888277 T-A Hetero INTERGENIC
SBS Chr11 7445916 A-G Hetero INTERGENIC
SBS Chr11 7446039 C-A Hetero INTERGENIC
SBS Chr11 9204562 T-C Hetero INTRON
SBS Chr11 25365721 A-G Hetero INTRON
SBS Chr11 25640349 C-A Hetero INTERGENIC
SBS Chr12 17429887 G-A Homo INTERGENIC
SBS Chr12 22749594 C-T Hetero INTERGENIC
SBS Chr12 27058506 A-G Hetero INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 1254110 1254111 1
Deletion Chr9 2019675 2019679 4
Deletion Chr4 2062001 2446000 383999 11
Deletion Chr4 2168206 2168207 1
Deletion Chr4 2449001 2690000 240999 6
Deletion Chr8 2668610 2668617 7
Deletion Chr5 3717934 3717944 10
Deletion Chr2 10143252 10143253 1
Deletion Chr11 14093572 14093574 2
Deletion Chr4 15314001 15357000 42999 5
Deletion Chr9 16356164 16356170 6
Deletion Chr4 16701184 16701185 1
Deletion Chr11 18059001 18277000 217999 7
Deletion Chr7 19038625 19038646 21
Deletion Chr7 19095847 19095848 1
Deletion Chr7 19394843 19394862 19 OsKitaake07g157300
Deletion Chr11 22470084 22470088 4
Deletion Chr12 22679001 22695000 15999 OsKitaake12g178700
Deletion Chr11 28764269 28764271 2
Deletion Chr5 29417209 29417210 1

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 27224102 27224105 2
Insertion Chr4 20202830 20202833 2
Insertion Chr8 6738509 6738517 7
Insertion Chr8 14834710 14834713 2
Insertion Chr8 16521293 16521296 2
Insertion Chr3 22492942 22492944 1

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 384686 1138965
Inversion Chr2 2510516 3465324
Inversion Chr2 2510521 3465326
Inversion Chr11 17686277 18431065
Inversion Chr2 32530165 32634145 OsKitaake02g333900
Inversion Chr2 32530166 32634167 OsKitaake02g333900

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 1308976 Chr2 26100307 OsKitaake02g258200
Translocation Chr5 1308984 Chr2 26100172 OsKitaake02g258200
Translocation Chr11 15315625 Chr4 17645077 OsKitaake04g088300
Translocation Chr11 15318104 Chr4 17645116 OsKitaake04g088300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5530914	T-A	Homo	INTRON
SBS	Chr1	13442632	G-C	Hetero	INTERGENIC
SBS	Chr1	32184012	T-G	Hetero	INTERGENIC
SBS	Chr1	32978674	T-C	Hetero	INTERGENIC
SBS	Chr1	40568590	A-C	Hetero	INTERGENIC
SBS	Chr2	4601361	G-A	Hetero	START_GAINED
SBS	Chr2	4654985	A-G	Hetero	INTERGENIC
SBS	Chr2	6864754	C-A	Hetero	INTERGENIC
SBS	Chr2	12868640	C-T	Hetero	INTERGENIC
SBS	Chr2	14471699	T-C	Hetero	INTERGENIC
SBS	Chr3	8092262	T-A	Hetero	UTR_3_PRIME
SBS	Chr3	16566394	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g209400
SBS	Chr4	7063892	G-A	Hetero	INTERGENIC
SBS	Chr4	7063893	T-A	Hetero	INTERGENIC
SBS	Chr4	7762120	G-C	Hetero	UTR_5_PRIME
SBS	Chr4	10078200	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr4	10078201	A-C	Hetero	SYNONYMOUS_CODING
SBS	Chr4	16611350	G-C	Hetero	INTRON
SBS	Chr4	17795246	T-G	Hetero	INTERGENIC
SBS	Chr5	628299	G-A	Homo	INTERGENIC
SBS	Chr5	20610674	T-A	Hetero	INTERGENIC
SBS	Chr5	26448118	T-C	Hetero	INTERGENIC
SBS	Chr6	15968169	T-C	Hetero	INTERGENIC
SBS	Chr6	20311039	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr6	24815357	T-C	Hetero	INTERGENIC
SBS	Chr7	6844432	C-A	Hetero	INTERGENIC
SBS	Chr7	8219047	C-G	Hetero	INTERGENIC
SBS	Chr7	10764788	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g102501
SBS	Chr7	13450427	C-T	Hetero	INTERGENIC
SBS	Chr7	16348046	T-C	Homo	INTERGENIC
SBS	Chr7	18593008	T-A	Homo	INTERGENIC
SBS	Chr7	19351680	C-T	Homo	INTERGENIC
SBS	Chr7	19640259	A-T	Homo	INTERGENIC
SBS	Chr9	3180912	G-A	Hetero	INTERGENIC
SBS	Chr9	6862516	A-G	Homo	INTERGENIC
SBS	Chr9	7995671	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g045100
SBS	Chr9	10777823	T-A	Hetero	INTERGENIC
SBS	Chr9	21974935	C-A	Hetero	INTRON
SBS	Chr10	2718196	A-G	Homo	INTRON
SBS	Chr11	6888277	T-A	Hetero	INTERGENIC
SBS	Chr11	7445916	A-G	Hetero	INTERGENIC
SBS	Chr11	7446039	C-A	Hetero	INTERGENIC
SBS	Chr11	9204562	T-C	Hetero	INTRON
SBS	Chr11	25365721	A-G	Hetero	INTRON
SBS	Chr11	25640349	C-A	Hetero	INTERGENIC
SBS	Chr12	17429887	G-A	Homo	INTERGENIC
SBS	Chr12	22749594	C-T	Hetero	INTERGENIC
SBS	Chr12	27058506	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	1254110	1254111	1
Deletion	Chr9	2019675	2019679	4
Deletion	Chr4	2062001	2446000	383999	11
Deletion	Chr4	2168206	2168207	1
Deletion	Chr4	2449001	2690000	240999	6
Deletion	Chr8	2668610	2668617	7
Deletion	Chr5	3717934	3717944	10
Deletion	Chr2	10143252	10143253	1
Deletion	Chr11	14093572	14093574	2
Deletion	Chr4	15314001	15357000	42999	5
Deletion	Chr9	16356164	16356170	6
Deletion	Chr4	16701184	16701185	1
Deletion	Chr11	18059001	18277000	217999	7
Deletion	Chr7	19038625	19038646	21
Deletion	Chr7	19095847	19095848	1
Deletion	Chr7	19394843	19394862	19	OsKitaake07g157300
Deletion	Chr11	22470084	22470088	4
Deletion	Chr12	22679001	22695000	15999	OsKitaake12g178700
Deletion	Chr11	28764269	28764271	2
Deletion	Chr5	29417209	29417210	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	384686	1138965
Inversion	Chr2	2510516	3465324
Inversion	Chr2	2510521	3465326
Inversion	Chr11	17686277	18431065
Inversion	Chr2	32530165	32634145	OsKitaake02g333900
Inversion	Chr2	32530166	32634167	OsKitaake02g333900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes