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Mutant Information

Mutant Name	FN2081-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2081-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13936342 C-T Hetero INTERGENIC
SBS Chr1 29927423 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g293900
SBS Chr1 35059159 T-A Hetero INTERGENIC
SBS Chr2 1060872 T-A Hetero INTRON
SBS Chr2 2767684 C-T Hetero SYNONYMOUS_CODING
SBS Chr2 10550566 G-T Homo INTERGENIC
SBS Chr2 15349178 T-G Hetero INTRON
SBS Chr2 20449887 G-C Homo INTERGENIC
SBS Chr3 23099149 G-A Homo INTERGENIC
SBS Chr4 6154031 C-T Homo INTERGENIC
SBS Chr4 11221235 C-A Homo INTERGENIC
SBS Chr4 12922192 T-A Homo INTERGENIC
SBS Chr5 8165030 T-G Hetero INTERGENIC
SBS Chr6 23295384 T-A Homo INTERGENIC
SBS Chr6 23295385 G-A Homo INTERGENIC
SBS Chr7 3922924 C-A Hetero INTERGENIC
SBS Chr7 6233756 C-G Homo INTERGENIC
SBS Chr8 741413 G-C Hetero INTERGENIC
SBS Chr8 9136715 T-A Hetero INTERGENIC
SBS Chr8 9564490 C-A Hetero INTERGENIC
SBS Chr8 11068277 C-T Hetero INTERGENIC
SBS Chr8 29315527 G-A Hetero INTERGENIC
SBS Chr9 9269332 C-T Homo INTERGENIC
SBS Chr11 276198 G-A Hetero INTERGENIC
SBS Chr11 1323515 C-A Hetero INTERGENIC
SBS Chr11 1781108 G-C Hetero UTR_3_PRIME
SBS Chr11 8882293 G-T Hetero INTERGENIC
SBS Chr11 9410510 A-C Hetero INTERGENIC
SBS Chr11 13298777 C-G Hetero INTERGENIC
SBS Chr11 15087576 G-A Hetero INTERGENIC
SBS Chr12 13123032 G-T Homo NON_SYNONYMOUS_CODING OsKitaake12g109550
SBS Chr12 17336951 T-A Homo INTERGENIC
SBS Chr12 17336952 G-T Homo INTERGENIC
SBS Chr12 27055543 G-A Homo INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 167746 167747 1
Deletion Chr3 821477 821479 2
Deletion Chr12 2247825 2247827 2 OsKitaake12g034800
Deletion Chr10 2888842 2888846 4
Deletion Chr5 3319869 3319882 13
Deletion Chr4 4757606 4757607 1
Deletion Chr1 7372701 7372705 4
Deletion Chr8 8794293 8794295 2
Deletion Chr11 9646283 9646286 3
Deletion Chr2 10155284 10155285 1 OsKitaake02g121901
Deletion Chr7 11203198 11203210 12
Deletion Chr2 11500849 11500850 1
Deletion Chr6 16494001 16517000 22999
Deletion Chr4 18066001 18113000 46999 OsKitaake04g091200
Deletion Chr8 20662733 20662738 5
Deletion Chr1 23065874 23065875 1
Deletion Chr3 25856428 25856430 2
Deletion Chr7 27028922 27028943 21
Deletion Chr5 28236283 28236284 1
Deletion Chr3 29460693 29460705 12

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 6209644 6209647 2
Insertion Chr5 6785620 6785625 4
Insertion Chr11 14135798 14135801 2
Insertion Chr6 21477894 21477897 2
Insertion Chr7 11995366 11995368 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13936342	C-T	Hetero	INTERGENIC
SBS	Chr1	29927423	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g293900
SBS	Chr1	35059159	T-A	Hetero	INTERGENIC
SBS	Chr2	1060872	T-A	Hetero	INTRON
SBS	Chr2	2767684	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr2	10550566	G-T	Homo	INTERGENIC
SBS	Chr2	15349178	T-G	Hetero	INTRON
SBS	Chr2	20449887	G-C	Homo	INTERGENIC
SBS	Chr3	23099149	G-A	Homo	INTERGENIC
SBS	Chr4	6154031	C-T	Homo	INTERGENIC
SBS	Chr4	11221235	C-A	Homo	INTERGENIC
SBS	Chr4	12922192	T-A	Homo	INTERGENIC
SBS	Chr5	8165030	T-G	Hetero	INTERGENIC
SBS	Chr6	23295384	T-A	Homo	INTERGENIC
SBS	Chr6	23295385	G-A	Homo	INTERGENIC
SBS	Chr7	3922924	C-A	Hetero	INTERGENIC
SBS	Chr7	6233756	C-G	Homo	INTERGENIC
SBS	Chr8	741413	G-C	Hetero	INTERGENIC
SBS	Chr8	9136715	T-A	Hetero	INTERGENIC
SBS	Chr8	9564490	C-A	Hetero	INTERGENIC
SBS	Chr8	11068277	C-T	Hetero	INTERGENIC
SBS	Chr8	29315527	G-A	Hetero	INTERGENIC
SBS	Chr9	9269332	C-T	Homo	INTERGENIC
SBS	Chr11	276198	G-A	Hetero	INTERGENIC
SBS	Chr11	1323515	C-A	Hetero	INTERGENIC
SBS	Chr11	1781108	G-C	Hetero	UTR_3_PRIME
SBS	Chr11	8882293	G-T	Hetero	INTERGENIC
SBS	Chr11	9410510	A-C	Hetero	INTERGENIC
SBS	Chr11	13298777	C-G	Hetero	INTERGENIC
SBS	Chr11	15087576	G-A	Hetero	INTERGENIC
SBS	Chr12	13123032	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g109550
SBS	Chr12	17336951	T-A	Homo	INTERGENIC
SBS	Chr12	17336952	G-T	Homo	INTERGENIC
SBS	Chr12	27055543	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	167746	167747	1
Deletion	Chr3	821477	821479	2
Deletion	Chr12	2247825	2247827	2	OsKitaake12g034800
Deletion	Chr10	2888842	2888846	4
Deletion	Chr5	3319869	3319882	13
Deletion	Chr4	4757606	4757607	1
Deletion	Chr1	7372701	7372705	4
Deletion	Chr8	8794293	8794295	2
Deletion	Chr11	9646283	9646286	3
Deletion	Chr2	10155284	10155285	1	OsKitaake02g121901
Deletion	Chr7	11203198	11203210	12
Deletion	Chr2	11500849	11500850	1
Deletion	Chr6	16494001	16517000	22999
Deletion	Chr4	18066001	18113000	46999	OsKitaake04g091200
Deletion	Chr8	20662733	20662738	5
Deletion	Chr1	23065874	23065875	1
Deletion	Chr3	25856428	25856430	2
Deletion	Chr7	27028922	27028943	21
Deletion	Chr5	28236283	28236284	1
Deletion	Chr3	29460693	29460705	12

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes