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Mutant Information

Mutant Name	FN2083-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2083-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1910827 A-G Hetero INTRON
SBS Chr1 7341353 C-T Hetero INTERGENIC
SBS Chr1 8611148 C-T Homo INTERGENIC
SBS Chr1 12975674 G-A Hetero INTERGENIC
SBS Chr1 31327633 C-G Homo INTERGENIC
SBS Chr1 37452427 C-T Hetero INTERGENIC
SBS Chr1 38062147 G-A Hetero INTERGENIC
SBS Chr2 1446653 G-A Hetero UTR_5_PRIME
SBS Chr3 10257397 C-A Homo INTERGENIC
SBS Chr3 20524276 G-A Hetero INTERGENIC
SBS Chr4 8586246 C-T Homo INTERGENIC
SBS Chr4 36785001 A-T Homo INTRON
SBS Chr5 886951 G-A Hetero INTERGENIC
SBS Chr5 3573698 A-G Homo INTRON
SBS Chr5 16190147 A-G Hetero UTR_5_PRIME
SBS Chr5 21296101 G-T Hetero INTERGENIC
SBS Chr5 24357529 G-A Hetero SYNONYMOUS_CODING
SBS Chr6 3568219 T-C Hetero UTR_3_PRIME
SBS Chr6 8335708 A-T Hetero INTERGENIC
SBS Chr6 16042426 C-T Hetero INTRON
SBS Chr6 20239914 G-T Hetero INTERGENIC
SBS Chr6 23171873 C-T Hetero UTR_3_PRIME
SBS Chr6 28573859 A-C Hetero INTERGENIC
SBS Chr7 4774571 A-T Homo INTERGENIC
SBS Chr7 4774572 G-T Homo INTERGENIC
SBS Chr7 7756952 C-T Homo INTERGENIC
SBS Chr7 12142734 A-T Hetero INTERGENIC
SBS Chr7 13561110 G-A Hetero INTERGENIC
SBS Chr7 15982048 G-A Hetero INTERGENIC
SBS Chr7 19551055 C-G Hetero INTERGENIC
SBS Chr7 22589178 G-A Homo INTERGENIC
SBS Chr8 5087290 C-G Homo INTERGENIC
SBS Chr8 23267624 C-T Homo INTERGENIC
SBS Chr9 11293362 T-C Homo INTERGENIC
SBS Chr10 3665384 G-A Homo INTERGENIC
SBS Chr10 8359791 T-C Hetero INTERGENIC
SBS Chr10 22101597 C-G Hetero UTR_5_PRIME
SBS Chr11 2691208 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g038200
SBS Chr11 7615595 C-A Hetero INTERGENIC
SBS Chr11 13189358 G-A Hetero INTERGENIC
SBS Chr12 4334107 T-C Hetero INTERGENIC
SBS Chr12 16393740 T-C Homo INTERGENIC

Deletions: 42

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 19031 19032 1
Deletion Chr6 20090 20091 1
Deletion Chr6 21148 21149 1
Deletion Chr12 2139591 2139600 9
Deletion Chr8 2812175 2812197 22 OsKitaake08g031132
Deletion Chr7 3595129 3595144 15
Deletion Chr6 4130063 4130064 1
Deletion Chr7 4247600 4247601 1
Deletion Chr4 6378295 6378296 1
Deletion Chr10 6457059 6457069 10
Deletion Chr5 6509046 6509061 15
Deletion Chr7 7907248 7907249 1
Deletion Chr10 7927299 7927300 1
Deletion Chr10 8678174 8678339 165
Deletion Chr10 8678870 8679035 165
Deletion Chr7 9521211 9521213 2
Deletion Chr3 9771721 9771725 4
Deletion Chr7 9991991 9991993 2
Deletion Chr3 10127123 10127124 1
Deletion Chr4 10450844 10450854 10
Deletion Chr2 11682007 11682008 1
Deletion Chr12 11719649 11719804 155
Deletion Chr11 12526345 12526499 154
Deletion Chr1 15440193 15440205 12
Deletion Chr6 15741733 15741734 1
Deletion Chr6 15743124 15743125 1
Deletion Chr6 15750974 15750975 1
Deletion Chr6 15751284 15751285 1
Deletion Chr5 15807633 15807637 4
Deletion Chr10 18312122 18312123 1
Deletion Chr10 19948846 19948853 7
Deletion Chr3 20052841 20052996 155
Deletion Chr10 20944761 20944771 10
Deletion Chr8 22963001 22972000 8999 OsKitaake08g176100
Deletion Chr4 28102802 28102803 1
Deletion Chr1 29408630 29408638 8 OsKitaake01g287900
Deletion Chr3 30055684 30055686 2
Deletion Chr5 30165667 30165668 1
Deletion Chr5 30226513 30226514 1
Deletion Chr5 30246720 30246721 1
Deletion Chr4 32815016 32815021 5 OsKitaake04g264900
Deletion Chr4 35790048 35790052 4

Insertions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 5070714 5070717 2
Insertion Chr5 10666261 10666264 2
Insertion Chr6 1061584 1061587 2
Insertion Chr12 6903938 6903941 2
Insertion Chr12 9072331 9072334 2
Insertion Chr3 20027335 20027337 1
Insertion Chr3 20028375 20028377 1
Insertion Chr4 12493991 12493993 1
Insertion Chr6 6433 6435 1
Insertion Chr6 15739554 15739556 1
Insertion Chr6 15745022 15745025 2
Insertion Chr9 19991864 19991867 2 OsKitaake09g166800
Insertion Chr11 6980489 6980491 1
Insertion Chr12 11717161 11717163 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 1092860 1524053 2
Inversion Chr10 13131316 13149855

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 8628821 Chr6 14760507
Translocation Chr10 8667852 Chr1 17285827
Translocation Chr10 8674615 Chr1 17221762
Translocation Chr9 20623465 Chr2 25288905

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1910827	A-G	Hetero	INTRON
SBS	Chr1	7341353	C-T	Hetero	INTERGENIC
SBS	Chr1	8611148	C-T	Homo	INTERGENIC
SBS	Chr1	12975674	G-A	Hetero	INTERGENIC
SBS	Chr1	31327633	C-G	Homo	INTERGENIC
SBS	Chr1	37452427	C-T	Hetero	INTERGENIC
SBS	Chr1	38062147	G-A	Hetero	INTERGENIC
SBS	Chr2	1446653	G-A	Hetero	UTR_5_PRIME
SBS	Chr3	10257397	C-A	Homo	INTERGENIC
SBS	Chr3	20524276	G-A	Hetero	INTERGENIC
SBS	Chr4	8586246	C-T	Homo	INTERGENIC
SBS	Chr4	36785001	A-T	Homo	INTRON
SBS	Chr5	886951	G-A	Hetero	INTERGENIC
SBS	Chr5	3573698	A-G	Homo	INTRON
SBS	Chr5	16190147	A-G	Hetero	UTR_5_PRIME
SBS	Chr5	21296101	G-T	Hetero	INTERGENIC
SBS	Chr5	24357529	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr6	3568219	T-C	Hetero	UTR_3_PRIME
SBS	Chr6	8335708	A-T	Hetero	INTERGENIC
SBS	Chr6	16042426	C-T	Hetero	INTRON
SBS	Chr6	20239914	G-T	Hetero	INTERGENIC
SBS	Chr6	23171873	C-T	Hetero	UTR_3_PRIME
SBS	Chr6	28573859	A-C	Hetero	INTERGENIC
SBS	Chr7	4774571	A-T	Homo	INTERGENIC
SBS	Chr7	4774572	G-T	Homo	INTERGENIC
SBS	Chr7	7756952	C-T	Homo	INTERGENIC
SBS	Chr7	12142734	A-T	Hetero	INTERGENIC
SBS	Chr7	13561110	G-A	Hetero	INTERGENIC
SBS	Chr7	15982048	G-A	Hetero	INTERGENIC
SBS	Chr7	19551055	C-G	Hetero	INTERGENIC
SBS	Chr7	22589178	G-A	Homo	INTERGENIC
SBS	Chr8	5087290	C-G	Homo	INTERGENIC
SBS	Chr8	23267624	C-T	Homo	INTERGENIC
SBS	Chr9	11293362	T-C	Homo	INTERGENIC
SBS	Chr10	3665384	G-A	Homo	INTERGENIC
SBS	Chr10	8359791	T-C	Hetero	INTERGENIC
SBS	Chr10	22101597	C-G	Hetero	UTR_5_PRIME
SBS	Chr11	2691208	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g038200
SBS	Chr11	7615595	C-A	Hetero	INTERGENIC
SBS	Chr11	13189358	G-A	Hetero	INTERGENIC
SBS	Chr12	4334107	T-C	Hetero	INTERGENIC
SBS	Chr12	16393740	T-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	19031	19032	1
Deletion	Chr6	20090	20091	1
Deletion	Chr6	21148	21149	1
Deletion	Chr12	2139591	2139600	9
Deletion	Chr8	2812175	2812197	22	OsKitaake08g031132
Deletion	Chr7	3595129	3595144	15
Deletion	Chr6	4130063	4130064	1
Deletion	Chr7	4247600	4247601	1
Deletion	Chr4	6378295	6378296	1
Deletion	Chr10	6457059	6457069	10
Deletion	Chr5	6509046	6509061	15
Deletion	Chr7	7907248	7907249	1
Deletion	Chr10	7927299	7927300	1
Deletion	Chr10	8678174	8678339	165
Deletion	Chr10	8678870	8679035	165
Deletion	Chr7	9521211	9521213	2
Deletion	Chr3	9771721	9771725	4
Deletion	Chr7	9991991	9991993	2
Deletion	Chr3	10127123	10127124	1
Deletion	Chr4	10450844	10450854	10
Deletion	Chr2	11682007	11682008	1
Deletion	Chr12	11719649	11719804	155
Deletion	Chr11	12526345	12526499	154
Deletion	Chr1	15440193	15440205	12
Deletion	Chr6	15741733	15741734	1
Deletion	Chr6	15743124	15743125	1
Deletion	Chr6	15750974	15750975	1
Deletion	Chr6	15751284	15751285	1
Deletion	Chr5	15807633	15807637	4
Deletion	Chr10	18312122	18312123	1
Deletion	Chr10	19948846	19948853	7
Deletion	Chr3	20052841	20052996	155
Deletion	Chr10	20944761	20944771	10
Deletion	Chr8	22963001	22972000	8999	OsKitaake08g176100
Deletion	Chr4	28102802	28102803	1
Deletion	Chr1	29408630	29408638	8	OsKitaake01g287900
Deletion	Chr3	30055684	30055686	2
Deletion	Chr5	30165667	30165668	1
Deletion	Chr5	30226513	30226514	1
Deletion	Chr5	30246720	30246721	1
Deletion	Chr4	32815016	32815021	5	OsKitaake04g264900
Deletion	Chr4	35790048	35790052	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	1092860	1524053	2
Inversion	Chr10	13131316	13149855

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes