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Mutant Information

Mutant Name	FN2084-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2084-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6921030 C-T Hetero INTERGENIC
SBS Chr1 23236922 G-A Hetero INTERGENIC
SBS Chr1 24163203 C-A Homo INTERGENIC
SBS Chr1 27140369 G-T Homo INTERGENIC
SBS Chr1 34916959 A-T Homo INTERGENIC
SBS Chr3 18358102 G-T Hetero INTERGENIC
SBS Chr4 2995384 C-A Hetero INTERGENIC
SBS Chr4 12790481 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g061100
SBS Chr4 14546497 C-T Hetero INTERGENIC
SBS Chr4 15965461 T-C Hetero INTERGENIC
SBS Chr4 16383467 C-A Hetero INTERGENIC
SBS Chr5 1911981 A-T Hetero UTR_5_PRIME
SBS Chr5 13900952 T-A Homo INTERGENIC
SBS Chr5 20539078 G-A Hetero SPLICE_SITE_REGION
SBS Chr5 21958747 A-T Hetero INTERGENIC
SBS Chr7 2173821 G-T Hetero INTERGENIC
SBS Chr7 3762900 G-T Hetero INTERGENIC
SBS Chr7 8452694 A-G Hetero INTERGENIC
SBS Chr7 9614884 A-T Hetero INTERGENIC
SBS Chr7 27795548 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g259700
SBS Chr7 29239135 A-T Hetero INTRON
SBS Chr8 18852877 G-A Homo INTERGENIC
SBS Chr8 28627825 C-T Hetero INTERGENIC
SBS Chr9 2193405 T-C Homo INTERGENIC
SBS Chr10 17101326 T-C Hetero INTRON
SBS Chr11 5911364 G-A Homo INTERGENIC
SBS Chr11 23461800 A-T Hetero INTRON
SBS Chr12 9992038 C-A Hetero INTERGENIC
SBS Chr12 16187320 C-T Hetero SYNONYMOUS_CODING
SBS Chr12 16699708 T-C Hetero INTERGENIC
SBS Chr12 19351919 C-T Homo SYNONYMOUS_CODING

Deletions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 18326 18327 1
Deletion Chr7 524689 524690 1
Deletion Chr11 1166168 1166180 12
Deletion Chr3 5521001 5549000 27999 5
Deletion Chr12 27016001 27078000 61999 11
Deletion Chr2 29915322 29915323 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 40877936 40877939 2
Insertion Chr4 18838466 18838469 2
Insertion Chr6 6313680 6313685 4
Insertion Chr7 27040121 27040124 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 43652216 44184549 OsKitaake01g485100

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 3614125 Chr3 6158778 OsKitaake03g088200
Translocation Chr4 3614128 Chr3 6159424 OsKitaake03g088200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6921030	C-T	Hetero	INTERGENIC
SBS	Chr1	23236922	G-A	Hetero	INTERGENIC
SBS	Chr1	24163203	C-A	Homo	INTERGENIC
SBS	Chr1	27140369	G-T	Homo	INTERGENIC
SBS	Chr1	34916959	A-T	Homo	INTERGENIC
SBS	Chr3	18358102	G-T	Hetero	INTERGENIC
SBS	Chr4	2995384	C-A	Hetero	INTERGENIC
SBS	Chr4	12790481	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g061100
SBS	Chr4	14546497	C-T	Hetero	INTERGENIC
SBS	Chr4	15965461	T-C	Hetero	INTERGENIC
SBS	Chr4	16383467	C-A	Hetero	INTERGENIC
SBS	Chr5	1911981	A-T	Hetero	UTR_5_PRIME
SBS	Chr5	13900952	T-A	Homo	INTERGENIC
SBS	Chr5	20539078	G-A	Hetero	SPLICE_SITE_REGION
SBS	Chr5	21958747	A-T	Hetero	INTERGENIC
SBS	Chr7	2173821	G-T	Hetero	INTERGENIC
SBS	Chr7	3762900	G-T	Hetero	INTERGENIC
SBS	Chr7	8452694	A-G	Hetero	INTERGENIC
SBS	Chr7	9614884	A-T	Hetero	INTERGENIC
SBS	Chr7	27795548	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g259700
SBS	Chr7	29239135	A-T	Hetero	INTRON
SBS	Chr8	18852877	G-A	Homo	INTERGENIC
SBS	Chr8	28627825	C-T	Hetero	INTERGENIC
SBS	Chr9	2193405	T-C	Homo	INTERGENIC
SBS	Chr10	17101326	T-C	Hetero	INTRON
SBS	Chr11	5911364	G-A	Homo	INTERGENIC
SBS	Chr11	23461800	A-T	Hetero	INTRON
SBS	Chr12	9992038	C-A	Hetero	INTERGENIC
SBS	Chr12	16187320	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr12	16699708	T-C	Hetero	INTERGENIC
SBS	Chr12	19351919	C-T	Homo	SYNONYMOUS_CODING

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	18326	18327	1
Deletion	Chr7	524689	524690	1
Deletion	Chr11	1166168	1166180	12
Deletion	Chr3	5521001	5549000	27999	5
Deletion	Chr12	27016001	27078000	61999	11
Deletion	Chr2	29915322	29915323	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	43652216	44184549	OsKitaake01g485100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes