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Mutant Information

Mutant Name	FN2085-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2085-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 47

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 14655509 G-A Hetero INTRON
SBS Chr1 15983647 T-C Hetero INTERGENIC
SBS Chr1 18484357 G-A Hetero INTERGENIC
SBS Chr1 24829185 G-A Homo INTERGENIC
SBS Chr1 31477669 C-A Hetero INTERGENIC
SBS Chr1 36794599 T-C Homo UTR_3_PRIME
SBS Chr2 3915380 A-T Hetero INTERGENIC
SBS Chr2 4707303 A-T Hetero INTRON
SBS Chr2 6859455 A-T Hetero INTERGENIC
SBS Chr2 8370615 A-C Hetero INTERGENIC
SBS Chr2 26343963 A-T Hetero INTERGENIC
SBS Chr2 28161369 C-G Homo INTRON
SBS Chr3 2055344 A-G Homo INTERGENIC
SBS Chr3 7667074 T-A Homo INTERGENIC
SBS Chr3 16028093 C-T Homo INTERGENIC
SBS Chr3 26721834 G-A Hetero INTERGENIC
SBS Chr3 27421181 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g283000
SBS Chr3 27738921 T-C Hetero INTERGENIC
SBS Chr4 2983628 G-A Hetero INTERGENIC
SBS Chr4 12929011 T-A Hetero INTERGENIC
SBS Chr4 28031072 T-C Hetero INTRON
SBS Chr5 10148635 T-G Homo INTERGENIC
SBS Chr5 10409053 G-A Homo INTERGENIC
SBS Chr5 10819771 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake05g092700
SBS Chr5 18328028 C-G Homo INTERGENIC
SBS Chr5 28800789 A-G Hetero INTERGENIC
SBS Chr6 17008118 C-A Homo INTERGENIC
SBS Chr6 23259459 G-A Homo INTERGENIC
SBS Chr6 25460771 A-G Hetero INTERGENIC
SBS Chr7 13798446 C-A Hetero INTERGENIC
SBS Chr7 16072248 C-G Hetero INTERGENIC
SBS Chr7 28099016 C-A Homo INTRON
SBS Chr8 9406242 G-T Hetero INTRON
SBS Chr8 9406243 A-G Hetero INTRON
SBS Chr8 25781529 A-G Hetero INTRON
SBS Chr9 14056910 G-C Homo INTERGENIC
SBS Chr9 15606262 A-G Hetero INTERGENIC
SBS Chr9 18007480 A-G Hetero INTERGENIC
SBS Chr9 22038049 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake09g196900
SBS Chr10 2766195 A-C Hetero INTERGENIC
SBS Chr10 5261154 C-A Homo INTERGENIC
SBS Chr10 12018136 G-A Homo INTERGENIC
SBS Chr10 12188601 T-C Hetero INTERGENIC
SBS Chr10 13166033 T-C Hetero INTERGENIC
SBS Chr10 17176438 C-A Hetero INTRON
SBS Chr10 23594909 C-G Homo SYNONYMOUS_CODING
SBS Chr11 10913183 C-A Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 2379782 2379785 3
Deletion Chr8 6269242 6269423 181
Deletion Chr3 8054738 8054751 13 OsKitaake03g111500
Deletion Chr5 9989286 9989293 7
Deletion Chr8 10438340 10438342 2
Deletion Chr3 13479785 13479787 2
Deletion Chr9 15656901 15656902 1
Deletion Chr3 17101955 17101974 19
Deletion Chr3 17146001 17183000 36999 OsKitaake03g212800
Deletion Chr11 24813797 24813810 13
Deletion Chr7 24839696 24839698 2
Deletion Chr2 26957473 26957482 9
Deletion Chr2 28154312 28154314 2
Deletion Chr1 31346163 31346164 1 OsKitaake01g314400

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 29716800 29716804 3
Insertion Chr10 3732953 3732957 3

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 16847430 17431845 2
Inversion Chr1 24530659 24681835 OsKitaake01g238200
Inversion Chr1 24530667 24681848 OsKitaake01g238200
Inversion Chr11 24812182 24820026

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 16847426 Chr3 17141498 OsKitaake06g158600
Translocation Chr6 17431830 Chr3 17146078 OsKitaake06g162100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14655509	G-A	Hetero	INTRON
SBS	Chr1	15983647	T-C	Hetero	INTERGENIC
SBS	Chr1	18484357	G-A	Hetero	INTERGENIC
SBS	Chr1	24829185	G-A	Homo	INTERGENIC
SBS	Chr1	31477669	C-A	Hetero	INTERGENIC
SBS	Chr1	36794599	T-C	Homo	UTR_3_PRIME
SBS	Chr2	3915380	A-T	Hetero	INTERGENIC
SBS	Chr2	4707303	A-T	Hetero	INTRON
SBS	Chr2	6859455	A-T	Hetero	INTERGENIC
SBS	Chr2	8370615	A-C	Hetero	INTERGENIC
SBS	Chr2	26343963	A-T	Hetero	INTERGENIC
SBS	Chr2	28161369	C-G	Homo	INTRON
SBS	Chr3	2055344	A-G	Homo	INTERGENIC
SBS	Chr3	7667074	T-A	Homo	INTERGENIC
SBS	Chr3	16028093	C-T	Homo	INTERGENIC
SBS	Chr3	26721834	G-A	Hetero	INTERGENIC
SBS	Chr3	27421181	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g283000
SBS	Chr3	27738921	T-C	Hetero	INTERGENIC
SBS	Chr4	2983628	G-A	Hetero	INTERGENIC
SBS	Chr4	12929011	T-A	Hetero	INTERGENIC
SBS	Chr4	28031072	T-C	Hetero	INTRON
SBS	Chr5	10148635	T-G	Homo	INTERGENIC
SBS	Chr5	10409053	G-A	Homo	INTERGENIC
SBS	Chr5	10819771	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g092700
SBS	Chr5	18328028	C-G	Homo	INTERGENIC
SBS	Chr5	28800789	A-G	Hetero	INTERGENIC
SBS	Chr6	17008118	C-A	Homo	INTERGENIC
SBS	Chr6	23259459	G-A	Homo	INTERGENIC
SBS	Chr6	25460771	A-G	Hetero	INTERGENIC
SBS	Chr7	13798446	C-A	Hetero	INTERGENIC
SBS	Chr7	16072248	C-G	Hetero	INTERGENIC
SBS	Chr7	28099016	C-A	Homo	INTRON
SBS	Chr8	9406242	G-T	Hetero	INTRON
SBS	Chr8	9406243	A-G	Hetero	INTRON
SBS	Chr8	25781529	A-G	Hetero	INTRON
SBS	Chr9	14056910	G-C	Homo	INTERGENIC
SBS	Chr9	15606262	A-G	Hetero	INTERGENIC
SBS	Chr9	18007480	A-G	Hetero	INTERGENIC
SBS	Chr9	22038049	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g196900
SBS	Chr10	2766195	A-C	Hetero	INTERGENIC
SBS	Chr10	5261154	C-A	Homo	INTERGENIC
SBS	Chr10	12018136	G-A	Homo	INTERGENIC
SBS	Chr10	12188601	T-C	Hetero	INTERGENIC
SBS	Chr10	13166033	T-C	Hetero	INTERGENIC
SBS	Chr10	17176438	C-A	Hetero	INTRON
SBS	Chr10	23594909	C-G	Homo	SYNONYMOUS_CODING
SBS	Chr11	10913183	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	2379782	2379785	3
Deletion	Chr8	6269242	6269423	181
Deletion	Chr3	8054738	8054751	13	OsKitaake03g111500
Deletion	Chr5	9989286	9989293	7
Deletion	Chr8	10438340	10438342	2
Deletion	Chr3	13479785	13479787	2
Deletion	Chr9	15656901	15656902	1
Deletion	Chr3	17101955	17101974	19
Deletion	Chr3	17146001	17183000	36999	OsKitaake03g212800
Deletion	Chr11	24813797	24813810	13
Deletion	Chr7	24839696	24839698	2
Deletion	Chr2	26957473	26957482	9
Deletion	Chr2	28154312	28154314	2
Deletion	Chr1	31346163	31346164	1	OsKitaake01g314400

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	16847430	17431845	2
Inversion	Chr1	24530659	24681835	OsKitaake01g238200
Inversion	Chr1	24530667	24681848	OsKitaake01g238200
Inversion	Chr11	24812182	24820026

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes