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Mutant Information

Mutant Name	FN2086-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2086-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 24962254 G-T Hetero INTERGENIC
SBS Chr2 21513616 T-A Hetero INTERGENIC
SBS Chr2 33662454 T-C Hetero INTRON
SBS Chr3 18095404 T-A Homo INTERGENIC
SBS Chr4 3561774 G-A Hetero INTERGENIC
SBS Chr4 20537366 T-A Hetero INTERGENIC
SBS Chr4 20537367 C-A Hetero INTERGENIC
SBS Chr4 33711160 C-T Homo INTRON
SBS Chr5 2012242 T-A Homo INTERGENIC
SBS Chr5 5146511 T-C Homo INTRON
SBS Chr5 23845790 C-T Homo INTERGENIC
SBS Chr5 25600314 T-A Homo INTERGENIC
SBS Chr6 9937928 A-T Homo INTERGENIC
SBS Chr6 10825573 C-T Hetero INTERGENIC
SBS Chr6 20068094 T-C Homo INTERGENIC
SBS Chr6 23454754 C-G Homo UTR_3_PRIME
SBS Chr6 29355989 G-A Hetero INTERGENIC
SBS Chr6 29844534 C-A Hetero INTERGENIC
SBS Chr7 15811706 G-A Homo INTERGENIC
SBS Chr7 16586740 G-A Homo INTERGENIC
SBS Chr7 28989006 T-C Hetero UTR_3_PRIME
SBS Chr8 17391797 G-T Hetero INTERGENIC
SBS Chr8 18623344 C-A Hetero INTERGENIC
SBS Chr9 856458 C-T Hetero INTERGENIC
SBS Chr9 4314634 A-G Hetero INTERGENIC
SBS Chr9 10515241 G-A Hetero INTERGENIC
SBS Chr9 20561329 A-T Hetero INTERGENIC
SBS Chr11 13364948 C-G Homo INTERGENIC
SBS Chr12 2022526 G-A Homo INTERGENIC
SBS Chr12 12721899 C-T Homo INTERGENIC
SBS Chr12 16837703 C-T Hetero INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 252463 252554 91
Deletion Chr3 5555399 5555400 1
Deletion Chr1 6157197 6157200 3
Deletion Chr7 6328418 6328419 1
Deletion Chr1 6915808 6915811 3 OsKitaake01g087200
Deletion Chr3 8691967 8691978 11
Deletion Chr7 11628423 11628431 8
Deletion Chr5 13531563 13531576 13
Deletion Chr2 13844476 13844477 1
Deletion Chr6 15742351 15742352 1
Deletion Chr3 16128599 16128600 1
Deletion Chr7 16468001 16476000 7999 OsKitaake07g135500
Deletion Chr5 20932645 20932650 5
Deletion Chr5 27239764 27239765 1
Deletion Chr5 29918840 29918942 102
Deletion Chr6 30144853 30144859 6 OsKitaake06g283100
Deletion Chr4 30435750 30435763 13
Deletion Chr6 30852335 30852336 1
Deletion Chr3 33398046 33398058 12
Deletion Chr3 35238372 35238375 3

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 9161737 9161739 1 OsKitaake03g125100
Insertion Chr6 27120836 27120840 3
Insertion Chr7 10502967 10502969 1
Insertion Chr12 12751277 12751284 6

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 24678624 24678811

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 20585133 Chr3 15658521 2
Translocation Chr9 20585320 Chr3 15658515 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24962254	G-T	Hetero	INTERGENIC
SBS	Chr2	21513616	T-A	Hetero	INTERGENIC
SBS	Chr2	33662454	T-C	Hetero	INTRON
SBS	Chr3	18095404	T-A	Homo	INTERGENIC
SBS	Chr4	3561774	G-A	Hetero	INTERGENIC
SBS	Chr4	20537366	T-A	Hetero	INTERGENIC
SBS	Chr4	20537367	C-A	Hetero	INTERGENIC
SBS	Chr4	33711160	C-T	Homo	INTRON
SBS	Chr5	2012242	T-A	Homo	INTERGENIC
SBS	Chr5	5146511	T-C	Homo	INTRON
SBS	Chr5	23845790	C-T	Homo	INTERGENIC
SBS	Chr5	25600314	T-A	Homo	INTERGENIC
SBS	Chr6	9937928	A-T	Homo	INTERGENIC
SBS	Chr6	10825573	C-T	Hetero	INTERGENIC
SBS	Chr6	20068094	T-C	Homo	INTERGENIC
SBS	Chr6	23454754	C-G	Homo	UTR_3_PRIME
SBS	Chr6	29355989	G-A	Hetero	INTERGENIC
SBS	Chr6	29844534	C-A	Hetero	INTERGENIC
SBS	Chr7	15811706	G-A	Homo	INTERGENIC
SBS	Chr7	16586740	G-A	Homo	INTERGENIC
SBS	Chr7	28989006	T-C	Hetero	UTR_3_PRIME
SBS	Chr8	17391797	G-T	Hetero	INTERGENIC
SBS	Chr8	18623344	C-A	Hetero	INTERGENIC
SBS	Chr9	856458	C-T	Hetero	INTERGENIC
SBS	Chr9	4314634	A-G	Hetero	INTERGENIC
SBS	Chr9	10515241	G-A	Hetero	INTERGENIC
SBS	Chr9	20561329	A-T	Hetero	INTERGENIC
SBS	Chr11	13364948	C-G	Homo	INTERGENIC
SBS	Chr12	2022526	G-A	Homo	INTERGENIC
SBS	Chr12	12721899	C-T	Homo	INTERGENIC
SBS	Chr12	16837703	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	252463	252554	91
Deletion	Chr3	5555399	5555400	1
Deletion	Chr1	6157197	6157200	3
Deletion	Chr7	6328418	6328419	1
Deletion	Chr1	6915808	6915811	3	OsKitaake01g087200
Deletion	Chr3	8691967	8691978	11
Deletion	Chr7	11628423	11628431	8
Deletion	Chr5	13531563	13531576	13
Deletion	Chr2	13844476	13844477	1
Deletion	Chr6	15742351	15742352	1
Deletion	Chr3	16128599	16128600	1
Deletion	Chr7	16468001	16476000	7999	OsKitaake07g135500
Deletion	Chr5	20932645	20932650	5
Deletion	Chr5	27239764	27239765	1
Deletion	Chr5	29918840	29918942	102
Deletion	Chr6	30144853	30144859	6	OsKitaake06g283100
Deletion	Chr4	30435750	30435763	13
Deletion	Chr6	30852335	30852336	1
Deletion	Chr3	33398046	33398058	12
Deletion	Chr3	35238372	35238375	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	24678624	24678811

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes