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| Mutant Information |
|---|
| Mutant Name | FN2088-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2088-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
|
| Variant Information |
|---|
Single base substitutions: 25
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 11482610 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 16275882 | A-G | Homo | INTERGENIC | |
| SBS | Chr1 | 29857427 | A-G | Homo | INTERGENIC | |
| SBS | Chr2 | 10211964 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 30084911 | A-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake02g305500 |
| SBS | Chr3 | 10548748 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 23871512 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 1554029 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 6368494 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr4 | 9323984 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 35215401 | G-C | Homo | INTRON | |
| SBS | Chr5 | 19552140 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 13108004 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 1581194 | C-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake08g019800 |
| SBS | Chr8 | 9793620 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 15505146 | A-T | Hetero | UTR_5_PRIME | |
| SBS | Chr8 | 17754552 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 19868372 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 20349655 | A-T | Hetero | INTRON | |
| SBS | Chr8 | 24170712 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr8 | 24170713 | C-A | Hetero | UTR_3_PRIME | |
| SBS | Chr10 | 8626519 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 14679862 | G-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 29700603 | A-T | Homo | INTRON | |
| SBS | Chr12 | 23322182 | A-T | Hetero | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 5281935 | 5281936 | 1 | OsKitaake06g071100 |
| Deletion | Chr7 | 6830880 | 6830893 | 13 | |
| Deletion | Chr9 | 8775001 | 9032000 | 256999 | 13 |
| Deletion | Chr12 | 14505773 | 14505775 | 2 | |
| Deletion | Chr12 | 18598578 | 18598580 | 2 | |
| Deletion | Chr2 | 20767848 | 20767849 | 1 | |
| Deletion | Chr3 | 25941480 | 25941481 | 1 | |
| Deletion | Chr4 | 31957280 | 31957289 | 9 | |
| Deletion | Chr4 | 32112449 | 32112455 | 6 | OsKitaake04g255250 |
| Deletion | Chr4 | 32325100 | 32325108 | 8 | |
| Deletion | Chr4 | 35237920 | 35237921 | 1 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 37719752 | 37719755 | 2 | |
| Insertion | Chr8 | 11655385 | 11655388 | 2 | |
| Insertion | Chr9 | 12117705 | 12117709 | 3 | |
| Insertion | Chr8 | 9073214 | 9073218 | 3 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr5 | 13579878 | 13788250 | OsKitaake05g105100 |
| Inversion | Chr5 | 13579889 | 13789454 | OsKitaake05g105100 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr6 | 18096040 | Chr2 | 28462765 | OsKitaake02g286500 |
| Translocation | Chr8 | 22758826 | Chr3 | 9352231 | OsKitaake08g174500 |
| Translocation | Chr8 | 22760693 | Chr2 | 28462776 | OsKitaake02g286500 |