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Mutant Information

Mutant Name	FN2089-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2089-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 16213940 T-C Hetero INTERGENIC
SBS Chr1 19689964 T-C Hetero INTERGENIC
SBS Chr1 21216785 C-T Hetero INTERGENIC
SBS Chr1 26692635 T-C Homo UTR_3_PRIME
SBS Chr1 30288856 A-T Homo INTERGENIC
SBS Chr2 8642004 C-T Hetero INTERGENIC
SBS Chr2 8642172 A-T Hetero INTERGENIC
SBS Chr2 32471805 G-A Hetero INTERGENIC
SBS Chr3 6367365 T-C Hetero INTERGENIC
SBS Chr3 30513979 G-A Hetero INTERGENIC
SBS Chr4 6560117 C-A Homo INTERGENIC
SBS Chr4 12069707 C-T Homo INTERGENIC
SBS Chr4 16816379 G-A Homo UTR_5_PRIME
SBS Chr4 22726131 G-T Homo INTERGENIC
SBS Chr4 28355299 C-A Homo INTERGENIC
SBS Chr5 1900766 C-T Hetero SYNONYMOUS_CODING
SBS Chr5 11344923 T-C Hetero INTERGENIC
SBS Chr5 21560540 A-T Hetero INTERGENIC
SBS Chr5 25320585 C-A Hetero INTERGENIC
SBS Chr6 5362611 T-C Homo INTRON
SBS Chr6 30192871 T-A Hetero INTERGENIC
SBS Chr7 27812551 G-T Hetero INTERGENIC
SBS Chr8 12250057 C-T Hetero INTERGENIC
SBS Chr9 10646002 C-A Hetero INTERGENIC
SBS Chr9 16583126 C-G Homo INTRON
SBS Chr9 22642693 C-T Hetero INTERGENIC
SBS Chr10 3172938 C-A Homo INTERGENIC
SBS Chr11 15290959 C-A Hetero INTERGENIC
SBS Chr11 16711297 T-C Hetero INTERGENIC
SBS Chr11 23314273 G-A Hetero INTERGENIC
SBS Chr11 25870436 G-T Hetero INTERGENIC
SBS Chr11 29182699 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake11g239200
SBS Chr12 509052 G-A Hetero INTERGENIC
SBS Chr12 2288068 T-C Hetero INTERGENIC
SBS Chr12 12980976 G-A Homo INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 3612286 3612290 4
Deletion Chr10 4010976 4010984 8
Deletion Chr9 6686003 6686105 102
Deletion Chr6 8066619 8066621 2
Deletion Chr10 9661703 9661704 1
Deletion Chr12 12412974 12412981 7
Deletion Chr12 12917994 12918005 11
Deletion Chr2 19863228 19863229 1
Deletion Chr4 20678240 20678242 2
Deletion Chr10 21223262 21223266 4
Deletion Chr3 22203528 22203529 1
Deletion Chr7 22730842 22730843 1 OsKitaake07g194800
Deletion Chr1 31727001 31811000 83999 9
Deletion Chr1 40969498 40969508 10
Deletion Chr1 41867722 41867723 1

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 21530175 21530178 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 14170471 14196340 OsKitaake05g108700
Inversion Chr5 14170566 14196339 OsKitaake05g108700
Inversion Chr5 29363964 29367323 OsKitaake05g278900
Inversion Chr5 29364687 29367340 OsKitaake05g278900

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 18930784 Chr1 13152675

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16213940	T-C	Hetero	INTERGENIC
SBS	Chr1	19689964	T-C	Hetero	INTERGENIC
SBS	Chr1	21216785	C-T	Hetero	INTERGENIC
SBS	Chr1	26692635	T-C	Homo	UTR_3_PRIME
SBS	Chr1	30288856	A-T	Homo	INTERGENIC
SBS	Chr2	8642004	C-T	Hetero	INTERGENIC
SBS	Chr2	8642172	A-T	Hetero	INTERGENIC
SBS	Chr2	32471805	G-A	Hetero	INTERGENIC
SBS	Chr3	6367365	T-C	Hetero	INTERGENIC
SBS	Chr3	30513979	G-A	Hetero	INTERGENIC
SBS	Chr4	6560117	C-A	Homo	INTERGENIC
SBS	Chr4	12069707	C-T	Homo	INTERGENIC
SBS	Chr4	16816379	G-A	Homo	UTR_5_PRIME
SBS	Chr4	22726131	G-T	Homo	INTERGENIC
SBS	Chr4	28355299	C-A	Homo	INTERGENIC
SBS	Chr5	1900766	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr5	11344923	T-C	Hetero	INTERGENIC
SBS	Chr5	21560540	A-T	Hetero	INTERGENIC
SBS	Chr5	25320585	C-A	Hetero	INTERGENIC
SBS	Chr6	5362611	T-C	Homo	INTRON
SBS	Chr6	30192871	T-A	Hetero	INTERGENIC
SBS	Chr7	27812551	G-T	Hetero	INTERGENIC
SBS	Chr8	12250057	C-T	Hetero	INTERGENIC
SBS	Chr9	10646002	C-A	Hetero	INTERGENIC
SBS	Chr9	16583126	C-G	Homo	INTRON
SBS	Chr9	22642693	C-T	Hetero	INTERGENIC
SBS	Chr10	3172938	C-A	Homo	INTERGENIC
SBS	Chr11	15290959	C-A	Hetero	INTERGENIC
SBS	Chr11	16711297	T-C	Hetero	INTERGENIC
SBS	Chr11	23314273	G-A	Hetero	INTERGENIC
SBS	Chr11	25870436	G-T	Hetero	INTERGENIC
SBS	Chr11	29182699	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g239200
SBS	Chr12	509052	G-A	Hetero	INTERGENIC
SBS	Chr12	2288068	T-C	Hetero	INTERGENIC
SBS	Chr12	12980976	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	3612286	3612290	4
Deletion	Chr10	4010976	4010984	8
Deletion	Chr9	6686003	6686105	102
Deletion	Chr6	8066619	8066621	2
Deletion	Chr10	9661703	9661704	1
Deletion	Chr12	12412974	12412981	7
Deletion	Chr12	12917994	12918005	11
Deletion	Chr2	19863228	19863229	1
Deletion	Chr4	20678240	20678242	2
Deletion	Chr10	21223262	21223266	4
Deletion	Chr3	22203528	22203529	1
Deletion	Chr7	22730842	22730843	1	OsKitaake07g194800
Deletion	Chr1	31727001	31811000	83999	9
Deletion	Chr1	40969498	40969508	10
Deletion	Chr1	41867722	41867723	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	14170471	14196340	OsKitaake05g108700
Inversion	Chr5	14170566	14196339	OsKitaake05g108700
Inversion	Chr5	29363964	29367323	OsKitaake05g278900
Inversion	Chr5	29364687	29367340	OsKitaake05g278900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes