Search Kitaake

Mutant Information

Mutant Name	FN2091-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2091-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 16833224 C-T Hetero INTERGENIC
SBS Chr1 19163179 G-T Hetero INTERGENIC
SBS Chr1 35334072 C-A Hetero INTERGENIC
SBS Chr2 3253291 G-T Hetero INTRON
SBS Chr2 11281113 G-A Hetero UTR_3_PRIME
SBS Chr2 11995811 T-A Hetero SYNONYMOUS_CODING
SBS Chr2 31740717 C-G Hetero INTERGENIC
SBS Chr3 3496121 T-C Hetero INTERGENIC
SBS Chr3 15303427 C-T Hetero INTERGENIC
SBS Chr3 16651292 G-C Hetero INTERGENIC
SBS Chr3 33124299 C-A Hetero SYNONYMOUS_CODING
SBS Chr3 34985379 T-C Homo INTRON
SBS Chr3 37616491 G-C Homo INTRON
SBS Chr4 19072812 G-C Hetero INTERGENIC
SBS Chr5 4742391 G-A Hetero INTERGENIC
SBS Chr5 5978903 T-A Homo INTERGENIC
SBS Chr5 5978904 T-A Homo INTERGENIC
SBS Chr5 5978948 G-T Homo INTERGENIC
SBS Chr5 6670388 C-T Homo INTERGENIC
SBS Chr5 8226469 C-T Hetero INTERGENIC
SBS Chr5 11758008 G-A Hetero INTERGENIC
SBS Chr5 26057997 G-T Hetero INTERGENIC
SBS Chr6 8816646 T-A Hetero INTERGENIC
SBS Chr6 14575363 G-A Homo INTRON
SBS Chr6 15711291 T-G Homo INTERGENIC
SBS Chr6 24311544 C-T Hetero INTERGENIC
SBS Chr8 16561111 A-C Hetero INTRON
SBS Chr8 23184825 C-T Hetero INTERGENIC
SBS Chr8 28621076 T-C Hetero INTERGENIC
SBS Chr9 9708911 G-A Hetero INTERGENIC
SBS Chr10 13253854 G-A Hetero INTERGENIC
SBS Chr10 19710815 A-G Hetero UTR_5_PRIME
SBS Chr10 22917523 G-T Hetero INTRON
SBS Chr11 2032146 G-A Hetero INTERGENIC
SBS Chr11 12528522 G-A Hetero INTERGENIC
SBS Chr11 13328449 C-T Hetero INTERGENIC
SBS Chr11 21689629 T-A Hetero INTERGENIC
SBS Chr11 23031207 C-A Hetero INTRON
SBS Chr12 7655126 C-T Homo INTERGENIC
SBS Chr12 18783228 T-C Hetero INTERGENIC
SBS Chr12 19548957 C-T Homo INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 2839730 2839731 1
Deletion Chr11 3151231 3151236 5
Deletion Chr3 5714001 5772000 57999 8
Deletion Chr12 6470286 6470287 1
Deletion Chr12 8838788 8838789 1
Deletion Chr8 9316347 9316353 6
Deletion Chr4 9547232 9547233 1
Deletion Chr5 10186992 10186995 3
Deletion Chr6 12909755 12909761 6
Deletion Chr1 13845001 13909000 63999 OsKitaake01g160400
Deletion Chr1 13913001 13929000 15999 2
Deletion Chr6 14577001 14657000 79999 5
Deletion Chr11 14796064 14796073 9
Deletion Chr10 15363399 15363405 6
Deletion Chr5 18083850 18083854 4
Deletion Chr11 21406856 21406858 2
Deletion Chr3 37619339 37619341 2
Deletion Chr1 38500787 38500789 2
Deletion Chr1 39685576 39685577 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 4607924 4607928 3
Insertion Chr5 29763446 29763449 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 9197586 9666606
Inversion Chr6 14076764 14657004
Inversion Chr11 21807267 22435895 OsKitaake11g178000
Inversion Chr11 21807268 22435895 OsKitaake11g178000

Translocations: 7

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 1058172 Chr1 25159974
Translocation Chr11 1058173 Chr1 25159965
Translocation Chr3 12000885 Chr1 38646051
Translocation Chr3 12004388 Chr1 38646191
Translocation Chr6 14576920 Chr3 12004371 2
Translocation Chr3 14944723 Chr2 24691477 OsKitaake02g245500
Translocation Chr3 14944724 Chr2 24690195 OsKitaake02g245500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16833224	C-T	Hetero	INTERGENIC
SBS	Chr1	19163179	G-T	Hetero	INTERGENIC
SBS	Chr1	35334072	C-A	Hetero	INTERGENIC
SBS	Chr2	3253291	G-T	Hetero	INTRON
SBS	Chr2	11281113	G-A	Hetero	UTR_3_PRIME
SBS	Chr2	11995811	T-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	31740717	C-G	Hetero	INTERGENIC
SBS	Chr3	3496121	T-C	Hetero	INTERGENIC
SBS	Chr3	15303427	C-T	Hetero	INTERGENIC
SBS	Chr3	16651292	G-C	Hetero	INTERGENIC
SBS	Chr3	33124299	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr3	34985379	T-C	Homo	INTRON
SBS	Chr3	37616491	G-C	Homo	INTRON
SBS	Chr4	19072812	G-C	Hetero	INTERGENIC
SBS	Chr5	4742391	G-A	Hetero	INTERGENIC
SBS	Chr5	5978903	T-A	Homo	INTERGENIC
SBS	Chr5	5978904	T-A	Homo	INTERGENIC
SBS	Chr5	5978948	G-T	Homo	INTERGENIC
SBS	Chr5	6670388	C-T	Homo	INTERGENIC
SBS	Chr5	8226469	C-T	Hetero	INTERGENIC
SBS	Chr5	11758008	G-A	Hetero	INTERGENIC
SBS	Chr5	26057997	G-T	Hetero	INTERGENIC
SBS	Chr6	8816646	T-A	Hetero	INTERGENIC
SBS	Chr6	14575363	G-A	Homo	INTRON
SBS	Chr6	15711291	T-G	Homo	INTERGENIC
SBS	Chr6	24311544	C-T	Hetero	INTERGENIC
SBS	Chr8	16561111	A-C	Hetero	INTRON
SBS	Chr8	23184825	C-T	Hetero	INTERGENIC
SBS	Chr8	28621076	T-C	Hetero	INTERGENIC
SBS	Chr9	9708911	G-A	Hetero	INTERGENIC
SBS	Chr10	13253854	G-A	Hetero	INTERGENIC
SBS	Chr10	19710815	A-G	Hetero	UTR_5_PRIME
SBS	Chr10	22917523	G-T	Hetero	INTRON
SBS	Chr11	2032146	G-A	Hetero	INTERGENIC
SBS	Chr11	12528522	G-A	Hetero	INTERGENIC
SBS	Chr11	13328449	C-T	Hetero	INTERGENIC
SBS	Chr11	21689629	T-A	Hetero	INTERGENIC
SBS	Chr11	23031207	C-A	Hetero	INTRON
SBS	Chr12	7655126	C-T	Homo	INTERGENIC
SBS	Chr12	18783228	T-C	Hetero	INTERGENIC
SBS	Chr12	19548957	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	2839730	2839731	1
Deletion	Chr11	3151231	3151236	5
Deletion	Chr3	5714001	5772000	57999	8
Deletion	Chr12	6470286	6470287	1
Deletion	Chr12	8838788	8838789	1
Deletion	Chr8	9316347	9316353	6
Deletion	Chr4	9547232	9547233	1
Deletion	Chr5	10186992	10186995	3
Deletion	Chr6	12909755	12909761	6
Deletion	Chr1	13845001	13909000	63999	OsKitaake01g160400
Deletion	Chr1	13913001	13929000	15999	2
Deletion	Chr6	14577001	14657000	79999	5
Deletion	Chr11	14796064	14796073	9
Deletion	Chr10	15363399	15363405	6
Deletion	Chr5	18083850	18083854	4
Deletion	Chr11	21406856	21406858	2
Deletion	Chr3	37619339	37619341	2
Deletion	Chr1	38500787	38500789	2
Deletion	Chr1	39685576	39685577	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	9197586	9666606
Inversion	Chr6	14076764	14657004
Inversion	Chr11	21807267	22435895	OsKitaake11g178000
Inversion	Chr11	21807268	22435895	OsKitaake11g178000

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes