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Mutant Information

Mutant Name	FN2092-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2092-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9443602 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g121000
SBS Chr2 10799757 T-A Hetero INTERGENIC
SBS Chr2 20632014 A-G Hetero INTERGENIC
SBS Chr2 31310775 A-T Hetero INTERGENIC
SBS Chr3 6027505 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g086400
SBS Chr3 26743707 G-C Hetero INTRON
SBS Chr3 30125566 C-T Hetero INTERGENIC
SBS Chr4 17482689 G-T Homo INTRON
SBS Chr4 22444240 A-T Homo INTERGENIC
SBS Chr4 24748060 G-T Hetero INTRON
SBS Chr4 27249160 G-A Homo INTERGENIC
SBS Chr5 8813962 T-G Hetero INTERGENIC
SBS Chr5 19239398 G-A Hetero INTERGENIC
SBS Chr5 22024526 T-C Hetero INTERGENIC
SBS Chr5 25111406 T-G Homo INTERGENIC
SBS Chr6 1601487 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake06g019100
SBS Chr7 2346475 C-G Homo INTERGENIC
SBS Chr7 16786804 C-G Hetero INTERGENIC
SBS Chr7 17893099 C-A Hetero INTERGENIC
SBS Chr7 22452005 G-T Hetero INTERGENIC
SBS Chr9 13288492 G-A Homo INTERGENIC
SBS Chr10 7684736 T-A Hetero INTERGENIC
SBS Chr11 3418974 G-A Hetero INTERGENIC
SBS Chr11 8447210 G-A Hetero UTR_5_PRIME
SBS Chr11 13656624 A-T Hetero INTERGENIC
SBS Chr11 14843661 G-A Hetero INTERGENIC
SBS Chr11 16772587 T-G Hetero INTERGENIC
SBS Chr11 16941925 G-A Hetero INTERGENIC
SBS Chr11 19125318 G-C Hetero INTERGENIC
SBS Chr11 22309837 C-T Hetero INTERGENIC
SBS Chr11 26078903 C-T Homo INTERGENIC
SBS Chr12 17776244 C-T Hetero INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 2557808 2557816 8
Deletion Chr2 5492374 5492376 2
Deletion Chr6 8704723 8704726 3
Deletion Chr7 14205705 14205706 1
Deletion Chr12 15952001 16031000 78999 4
Deletion Chr12 16035001 16177000 141999 8
Deletion Chr7 18495410 18495411 1
Deletion Chr2 35552738 35552744 6

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 11856427 11856430 2
Insertion Chr1 26005535 26005538 2
Insertion Chr10 19277237 19277240 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 11212390 Chr6 29592614
Translocation Chr10 11217204 Chr6 29592598
Translocation Chr12 17658015 Chr6 8571565 OsKitaake12g130100
Translocation Chr12 17658462 Chr6 8571567 OsKitaake12g130100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9443602	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g121000
SBS	Chr2	10799757	T-A	Hetero	INTERGENIC
SBS	Chr2	20632014	A-G	Hetero	INTERGENIC
SBS	Chr2	31310775	A-T	Hetero	INTERGENIC
SBS	Chr3	6027505	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g086400
SBS	Chr3	26743707	G-C	Hetero	INTRON
SBS	Chr3	30125566	C-T	Hetero	INTERGENIC
SBS	Chr4	17482689	G-T	Homo	INTRON
SBS	Chr4	22444240	A-T	Homo	INTERGENIC
SBS	Chr4	24748060	G-T	Hetero	INTRON
SBS	Chr4	27249160	G-A	Homo	INTERGENIC
SBS	Chr5	8813962	T-G	Hetero	INTERGENIC
SBS	Chr5	19239398	G-A	Hetero	INTERGENIC
SBS	Chr5	22024526	T-C	Hetero	INTERGENIC
SBS	Chr5	25111406	T-G	Homo	INTERGENIC
SBS	Chr6	1601487	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g019100
SBS	Chr7	2346475	C-G	Homo	INTERGENIC
SBS	Chr7	16786804	C-G	Hetero	INTERGENIC
SBS	Chr7	17893099	C-A	Hetero	INTERGENIC
SBS	Chr7	22452005	G-T	Hetero	INTERGENIC
SBS	Chr9	13288492	G-A	Homo	INTERGENIC
SBS	Chr10	7684736	T-A	Hetero	INTERGENIC
SBS	Chr11	3418974	G-A	Hetero	INTERGENIC
SBS	Chr11	8447210	G-A	Hetero	UTR_5_PRIME
SBS	Chr11	13656624	A-T	Hetero	INTERGENIC
SBS	Chr11	14843661	G-A	Hetero	INTERGENIC
SBS	Chr11	16772587	T-G	Hetero	INTERGENIC
SBS	Chr11	16941925	G-A	Hetero	INTERGENIC
SBS	Chr11	19125318	G-C	Hetero	INTERGENIC
SBS	Chr11	22309837	C-T	Hetero	INTERGENIC
SBS	Chr11	26078903	C-T	Homo	INTERGENIC
SBS	Chr12	17776244	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	2557808	2557816	8
Deletion	Chr2	5492374	5492376	2
Deletion	Chr6	8704723	8704726	3
Deletion	Chr7	14205705	14205706	1
Deletion	Chr12	15952001	16031000	78999	4
Deletion	Chr12	16035001	16177000	141999	8
Deletion	Chr7	18495410	18495411	1
Deletion	Chr2	35552738	35552744	6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	11212390	Chr6	29592614
Translocation	Chr10	11217204	Chr6	29592598
Translocation	Chr12	17658015	Chr6	8571565	OsKitaake12g130100
Translocation	Chr12	17658462	Chr6	8571567	OsKitaake12g130100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes