Search Kitaake

Mutant Information

Mutant Name	FN2093-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2093-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 16

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 16153812 A-T Homo INTERGENIC
SBS Chr1 16153813 A-T Homo INTERGENIC
SBS Chr2 3609360 C-A Hetero INTERGENIC
SBS Chr4 18958082 C-A Homo INTERGENIC
SBS Chr4 23004418 G-T Hetero INTERGENIC
SBS Chr4 23004419 G-T Hetero INTERGENIC
SBS Chr4 26403933 T-A Homo INTERGENIC
SBS Chr6 4651982 G-T Hetero INTERGENIC
SBS Chr7 3479190 G-A Hetero INTRON
SBS Chr8 14858138 C-A Hetero INTERGENIC
SBS Chr9 2877039 G-A Hetero INTERGENIC
SBS Chr10 6756766 C-G Hetero INTERGENIC
SBS Chr11 981909 C-A Hetero INTERGENIC
SBS Chr11 1025324 C-A Hetero INTERGENIC
SBS Chr12 11396020 C-T Hetero INTERGENIC
SBS Chr12 23994339 G-T Hetero INTERGENIC

Deletions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 4562001 4962000 399999 6
Deletion Chr1 6637001 6660000 22999 4
Deletion Chr10 10203767 10203877 110
Deletion Chr4 13489041 13489054 13
Deletion Chr2 13621554 13621555 1
Deletion Chr1 39862188 39862298 110

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 17815998 17816002 3
Insertion Chr5 1429421 1429424 2
Insertion Chr5 9695636 9695638 1 OsKitaake05g088800

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 25266021 25553466 OsKitaake05g220300
Inversion Chr5 25266028 25553488 OsKitaake05g220300
Inversion Chr5 26123522 26652067 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 6364616 Chr5 27166832
Translocation Chr12 6364765 Chr5 26123511 OsKitaake05g230800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16153812	A-T	Homo	INTERGENIC
SBS	Chr1	16153813	A-T	Homo	INTERGENIC
SBS	Chr2	3609360	C-A	Hetero	INTERGENIC
SBS	Chr4	18958082	C-A	Homo	INTERGENIC
SBS	Chr4	23004418	G-T	Hetero	INTERGENIC
SBS	Chr4	23004419	G-T	Hetero	INTERGENIC
SBS	Chr4	26403933	T-A	Homo	INTERGENIC
SBS	Chr6	4651982	G-T	Hetero	INTERGENIC
SBS	Chr7	3479190	G-A	Hetero	INTRON
SBS	Chr8	14858138	C-A	Hetero	INTERGENIC
SBS	Chr9	2877039	G-A	Hetero	INTERGENIC
SBS	Chr10	6756766	C-G	Hetero	INTERGENIC
SBS	Chr11	981909	C-A	Hetero	INTERGENIC
SBS	Chr11	1025324	C-A	Hetero	INTERGENIC
SBS	Chr12	11396020	C-T	Hetero	INTERGENIC
SBS	Chr12	23994339	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	4562001	4962000	399999	6
Deletion	Chr1	6637001	6660000	22999	4
Deletion	Chr10	10203767	10203877	110
Deletion	Chr4	13489041	13489054	13
Deletion	Chr2	13621554	13621555	1
Deletion	Chr1	39862188	39862298	110

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	25266021	25553466	OsKitaake05g220300
Inversion	Chr5	25266028	25553488	OsKitaake05g220300
Inversion	Chr5	26123522	26652067	2

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes