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| Mutant Information |
|---|
| Mutant Name | FN2094-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2094-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
|
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 2250867 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 11525825 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 33207368 | C-T | Hetero | INTRON | |
| SBS | Chr2 | 6687559 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 20676107 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 24227806 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 19846209 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 33918886 | A-G | Homo | INTERGENIC | |
| SBS | Chr4 | 8472184 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 14484747 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 15463188 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 21415868 | T-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 33711710 | C-T | Hetero | INTRON | |
| SBS | Chr5 | 21830952 | T-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 13082696 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 13223459 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 29212106 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 29658718 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 25359315 | T-A | Homo | INTERGENIC | |
| SBS | Chr9 | 8650594 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 8841222 | T-C | Homo | INTERGENIC | |
| SBS | Chr10 | 12444206 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 21329907 | C-A | Homo | INTERGENIC | |
| SBS | Chr11 | 4947099 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 8451828 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 21388024 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 6833436 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 17436103 | T-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr12 | 18671449 | T-G | Hetero | SYNONYMOUS_CODING |
Deletions: 17
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 1878983 | 1878989 | 6 | |
| Deletion | Chr6 | 4393502 | 4393506 | 4 | |
| Deletion | Chr9 | 4659151 | 4659153 | 2 | |
| Deletion | Chr5 | 5341236 | 5341246 | 10 | |
| Deletion | Chr4 | 7011608 | 7011617 | 9 | |
| Deletion | Chr12 | 9147598 | 9147604 | 6 | |
| Deletion | Chr10 | 9217579 | 9217603 | 24 | |
| Deletion | Chr1 | 10939161 | 10939162 | 1 | |
| Deletion | Chr3 | 11572749 | 11572750 | 1 | |
| Deletion | Chr4 | 14747755 | 14747759 | 4 | |
| Deletion | Chr7 | 16648990 | 16648995 | 5 | |
| Deletion | Chr2 | 19489959 | 19489960 | 1 | |
| Deletion | Chr5 | 20975001 | 21021000 | 45999 | 6 |
| Deletion | Chr5 | 23869177 | 23869181 | 4 | |
| Deletion | Chr4 | 24617644 | 24617648 | 4 | |
| Deletion | Chr2 | 36553449 | 36553453 | 4 | OsKitaake02g388700 |
| Deletion | Chr1 | 38836319 | 38836326 | 7 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 21559673 | 21559675 | 1 | |
| Insertion | Chr12 | 20734708 | 20734712 | 3 | |
| Insertion | Chr5 | 12532511 | 12532513 | 1 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr11 | 28620760 | 29339670 | OsKitaake11g234500 |
| Inversion | Chr11 | 28620771 | 29339670 | OsKitaake11g234500 |