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Mutant Information

Mutant Name	FN2097-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2097-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1639368 G-A Hetero INTERGENIC
SBS Chr1 1868495 C-T Hetero INTERGENIC
SBS Chr1 13626807 C-T Hetero INTERGENIC
SBS Chr1 25944823 G-A Hetero INTERGENIC
SBS Chr1 27054623 T-C Hetero INTERGENIC
SBS Chr1 29515430 G-A Hetero INTERGENIC
SBS Chr2 5993674 T-G Homo INTERGENIC
SBS Chr2 7029330 T-C Homo INTERGENIC
SBS Chr2 11576096 C-A Hetero UTR_3_PRIME
SBS Chr2 13645251 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g150150
SBS Chr2 19138033 T-C Hetero INTERGENIC
SBS Chr2 20362232 G-A Hetero INTERGENIC
SBS Chr2 20612198 G-A Hetero INTERGENIC
SBS Chr2 27555972 A-C Hetero INTERGENIC
SBS Chr3 10458703 C-T Homo INTERGENIC
SBS Chr3 11661420 G-A Homo INTERGENIC
SBS Chr3 25429385 T-A Hetero INTERGENIC
SBS Chr4 4287770 C-T Homo INTERGENIC
SBS Chr4 17682451 A-T Hetero INTRON
SBS Chr5 17480331 T-A Hetero INTERGENIC
SBS Chr6 6507804 G-A Hetero INTERGENIC
SBS Chr6 18194220 C-G Homo INTERGENIC
SBS Chr6 25482706 C-T Hetero INTRON
SBS Chr7 15802977 C-T Hetero INTERGENIC
SBS Chr8 26763921 A-T Hetero INTERGENIC
SBS Chr9 3084661 G-A Homo INTERGENIC
SBS Chr10 6567479 C-G Hetero INTERGENIC
SBS Chr10 20651110 T-G Homo INTERGENIC
SBS Chr11 27001789 T-A Homo INTERGENIC

Deletions: 25

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 46670 46671 1 OsKitaake02g000700
Deletion Chr11 1168114 1168115 1
Deletion Chr11 3577457 3577464 7
Deletion Chr8 3597363 3597368 5
Deletion Chr12 4855632 4855634 2
Deletion Chr8 5255130 5255132 2
Deletion Chr4 6349649 6349650 1
Deletion Chr6 8851256 8851263 7
Deletion Chr6 9309314 9309317 3
Deletion Chr5 9650489 9650498 9
Deletion Chr9 11777528 11777529 1
Deletion Chr10 13209117 13209118 1
Deletion Chr7 13997451 13997458 7
Deletion Chr2 15579300 15579301 1
Deletion Chr7 19645678 19645682 4
Deletion Chr8 21206782 21206783 1
Deletion Chr5 22523001 22533000 9999 4
Deletion Chr5 23203237 23203245 8
Deletion Chr1 23661262 23661266 4
Deletion Chr10 23987587 23987588 1
Deletion Chr8 24054599 24054600 1
Deletion Chr5 26332462 26332469 7
Deletion Chr6 27383323 27383327 4
Deletion Chr3 29838571 29838573 2
Deletion Chr3 33274396 33274406 10

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 28155523 28155526 2
Insertion Chr1 43877342 43877346 3
Insertion Chr6 23221398 23221402 3
Insertion Chr12 12131658 12131662 3
Insertion Chr1 43966419 43966424 4

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 21712450 21778829 OsKitaake03g239000
Inversion Chr3 21712457 21778824 OsKitaake03g239000

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 7961831 Chr5 14568958
Translocation Chr7 15512815 Chr3 33328516 OsKitaake03g356100
Translocation Chr7 15512820 Chr3 33330163

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1639368	G-A	Hetero	INTERGENIC
SBS	Chr1	1868495	C-T	Hetero	INTERGENIC
SBS	Chr1	13626807	C-T	Hetero	INTERGENIC
SBS	Chr1	25944823	G-A	Hetero	INTERGENIC
SBS	Chr1	27054623	T-C	Hetero	INTERGENIC
SBS	Chr1	29515430	G-A	Hetero	INTERGENIC
SBS	Chr2	5993674	T-G	Homo	INTERGENIC
SBS	Chr2	7029330	T-C	Homo	INTERGENIC
SBS	Chr2	11576096	C-A	Hetero	UTR_3_PRIME
SBS	Chr2	13645251	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g150150
SBS	Chr2	19138033	T-C	Hetero	INTERGENIC
SBS	Chr2	20362232	G-A	Hetero	INTERGENIC
SBS	Chr2	20612198	G-A	Hetero	INTERGENIC
SBS	Chr2	27555972	A-C	Hetero	INTERGENIC
SBS	Chr3	10458703	C-T	Homo	INTERGENIC
SBS	Chr3	11661420	G-A	Homo	INTERGENIC
SBS	Chr3	25429385	T-A	Hetero	INTERGENIC
SBS	Chr4	4287770	C-T	Homo	INTERGENIC
SBS	Chr4	17682451	A-T	Hetero	INTRON
SBS	Chr5	17480331	T-A	Hetero	INTERGENIC
SBS	Chr6	6507804	G-A	Hetero	INTERGENIC
SBS	Chr6	18194220	C-G	Homo	INTERGENIC
SBS	Chr6	25482706	C-T	Hetero	INTRON
SBS	Chr7	15802977	C-T	Hetero	INTERGENIC
SBS	Chr8	26763921	A-T	Hetero	INTERGENIC
SBS	Chr9	3084661	G-A	Homo	INTERGENIC
SBS	Chr10	6567479	C-G	Hetero	INTERGENIC
SBS	Chr10	20651110	T-G	Homo	INTERGENIC
SBS	Chr11	27001789	T-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	46670	46671	1	OsKitaake02g000700
Deletion	Chr11	1168114	1168115	1
Deletion	Chr11	3577457	3577464	7
Deletion	Chr8	3597363	3597368	5
Deletion	Chr12	4855632	4855634	2
Deletion	Chr8	5255130	5255132	2
Deletion	Chr4	6349649	6349650	1
Deletion	Chr6	8851256	8851263	7
Deletion	Chr6	9309314	9309317	3
Deletion	Chr5	9650489	9650498	9
Deletion	Chr9	11777528	11777529	1
Deletion	Chr10	13209117	13209118	1
Deletion	Chr7	13997451	13997458	7
Deletion	Chr2	15579300	15579301	1
Deletion	Chr7	19645678	19645682	4
Deletion	Chr8	21206782	21206783	1
Deletion	Chr5	22523001	22533000	9999	4
Deletion	Chr5	23203237	23203245	8
Deletion	Chr1	23661262	23661266	4
Deletion	Chr10	23987587	23987588	1
Deletion	Chr8	24054599	24054600	1
Deletion	Chr5	26332462	26332469	7
Deletion	Chr6	27383323	27383327	4
Deletion	Chr3	29838571	29838573	2
Deletion	Chr3	33274396	33274406	10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	21712450	21778829	OsKitaake03g239000
Inversion	Chr3	21712457	21778824	OsKitaake03g239000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes