Search Kitaake

Mutant Information

Mutant Name	FN2098-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2098-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6222408 A-G Hetero INTRON
SBS Chr1 16283559 C-T Hetero INTERGENIC
SBS Chr1 22017911 A-C Hetero INTERGENIC
SBS Chr1 25151437 A-G Homo INTERGENIC
SBS Chr1 26785815 G-A Homo INTERGENIC
SBS Chr2 13929619 G-A Hetero INTERGENIC
SBS Chr2 14508926 C-G Hetero INTERGENIC
SBS Chr2 32196228 G-A Hetero INTRON
SBS Chr2 32853014 G-A Hetero INTERGENIC
SBS Chr2 32853026 G-A Hetero INTERGENIC
SBS Chr3 6196743 A-G Hetero INTERGENIC
SBS Chr3 33497088 C-T Hetero INTERGENIC
SBS Chr3 34024707 C-T Hetero INTERGENIC
SBS Chr4 586548 T-A Hetero UTR_3_PRIME
SBS Chr4 1149422 C-T Hetero INTERGENIC
SBS Chr4 1546572 G-A Hetero INTERGENIC
SBS Chr4 1546573 C-A Hetero INTERGENIC
SBS Chr4 14174610 A-G Hetero INTRON
SBS Chr5 6019911 G-A Hetero INTERGENIC
SBS Chr5 6580799 C-T Hetero INTERGENIC
SBS Chr5 17627355 T-C Hetero INTERGENIC
SBS Chr6 19149727 C-T Homo INTERGENIC
SBS Chr7 8230664 G-T Hetero INTRON
SBS Chr7 8230678 C-T Hetero INTRON
SBS Chr8 15310 A-G Hetero INTERGENIC
SBS Chr8 3525181 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g039500
SBS Chr8 12156586 C-T Hetero INTERGENIC
SBS Chr9 10813017 A-T Hetero INTRON
SBS Chr9 16086682 C-G Hetero INTERGENIC
SBS Chr9 21985761 G-A Hetero INTRON
SBS Chr11 2541282 A-T Hetero INTERGENIC
SBS Chr11 4874894 C-T Homo INTERGENIC
SBS Chr11 11376698 G-A Homo INTERGENIC
SBS Chr11 22998611 G-A Hetero INTRON
SBS Chr11 23290646 G-A Hetero UTR_5_PRIME

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 350531 350532 1
Deletion Chr8 1018169 1018170 1
Deletion Chr12 2428187 2428189 2
Deletion Chr9 4782653 4782661 8
Deletion Chr3 6904001 7077000 172999 18
Deletion Chr10 10254900 10254908 8
Deletion Chr12 11140391 11140404 13
Deletion Chr8 11607645 11607648 3
Deletion Chr12 14125375 14125392 17
Deletion Chr6 20663305 20663321 16
Deletion Chr9 20960149 20960150 1
Deletion Chr4 21302088 21302095 7
Deletion Chr1 22256324 22256327 3
Deletion Chr6 22295917 22295927 10
Deletion Chr7 23842342 23842357 15
Deletion Chr2 24907091 24907110 19
Deletion Chr11 26140610 26140613 3
Deletion Chr8 27149755 27149758 3
Deletion Chr6 27734437 27734449 12
Deletion Chr7 29096288 29096289 1
Deletion Chr1 30561740 30561748 8
Deletion Chr1 32528152 32528154 2

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr11 21987542 21987545 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 9552499 9774067 OsKitaake01g123900
Inversion Chr2 28655595 29282479 OsKitaake02g288300
Inversion Chr2 28674396 29282485

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 9594184 Chr2 16587337 OsKitaake02g169600
Translocation Chr2 28655604 Chr1 9774068 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6222408	A-G	Hetero	INTRON
SBS	Chr1	16283559	C-T	Hetero	INTERGENIC
SBS	Chr1	22017911	A-C	Hetero	INTERGENIC
SBS	Chr1	25151437	A-G	Homo	INTERGENIC
SBS	Chr1	26785815	G-A	Homo	INTERGENIC
SBS	Chr2	13929619	G-A	Hetero	INTERGENIC
SBS	Chr2	14508926	C-G	Hetero	INTERGENIC
SBS	Chr2	32196228	G-A	Hetero	INTRON
SBS	Chr2	32853014	G-A	Hetero	INTERGENIC
SBS	Chr2	32853026	G-A	Hetero	INTERGENIC
SBS	Chr3	6196743	A-G	Hetero	INTERGENIC
SBS	Chr3	33497088	C-T	Hetero	INTERGENIC
SBS	Chr3	34024707	C-T	Hetero	INTERGENIC
SBS	Chr4	586548	T-A	Hetero	UTR_3_PRIME
SBS	Chr4	1149422	C-T	Hetero	INTERGENIC
SBS	Chr4	1546572	G-A	Hetero	INTERGENIC
SBS	Chr4	1546573	C-A	Hetero	INTERGENIC
SBS	Chr4	14174610	A-G	Hetero	INTRON
SBS	Chr5	6019911	G-A	Hetero	INTERGENIC
SBS	Chr5	6580799	C-T	Hetero	INTERGENIC
SBS	Chr5	17627355	T-C	Hetero	INTERGENIC
SBS	Chr6	19149727	C-T	Homo	INTERGENIC
SBS	Chr7	8230664	G-T	Hetero	INTRON
SBS	Chr7	8230678	C-T	Hetero	INTRON
SBS	Chr8	15310	A-G	Hetero	INTERGENIC
SBS	Chr8	3525181	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g039500
SBS	Chr8	12156586	C-T	Hetero	INTERGENIC
SBS	Chr9	10813017	A-T	Hetero	INTRON
SBS	Chr9	16086682	C-G	Hetero	INTERGENIC
SBS	Chr9	21985761	G-A	Hetero	INTRON
SBS	Chr11	2541282	A-T	Hetero	INTERGENIC
SBS	Chr11	4874894	C-T	Homo	INTERGENIC
SBS	Chr11	11376698	G-A	Homo	INTERGENIC
SBS	Chr11	22998611	G-A	Hetero	INTRON
SBS	Chr11	23290646	G-A	Hetero	UTR_5_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	350531	350532	1
Deletion	Chr8	1018169	1018170	1
Deletion	Chr12	2428187	2428189	2
Deletion	Chr9	4782653	4782661	8
Deletion	Chr3	6904001	7077000	172999	18
Deletion	Chr10	10254900	10254908	8
Deletion	Chr12	11140391	11140404	13
Deletion	Chr8	11607645	11607648	3
Deletion	Chr12	14125375	14125392	17
Deletion	Chr6	20663305	20663321	16
Deletion	Chr9	20960149	20960150	1
Deletion	Chr4	21302088	21302095	7
Deletion	Chr1	22256324	22256327	3
Deletion	Chr6	22295917	22295927	10
Deletion	Chr7	23842342	23842357	15
Deletion	Chr2	24907091	24907110	19
Deletion	Chr11	26140610	26140613	3
Deletion	Chr8	27149755	27149758	3
Deletion	Chr6	27734437	27734449	12
Deletion	Chr7	29096288	29096289	1
Deletion	Chr1	30561740	30561748	8
Deletion	Chr1	32528152	32528154	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	9552499	9774067	OsKitaake01g123900
Inversion	Chr2	28655595	29282479	OsKitaake02g288300
Inversion	Chr2	28674396	29282485

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes