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Mutant Information

Mutant Name	FN2106-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2106-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Normal (Between 75% and 125%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1081606 C-T Hetero START_GAINED
SBS Chr1 4638733 A-G Hetero INTERGENIC
SBS Chr1 22320600 G-A Hetero INTERGENIC
SBS Chr1 38401574 A-G Hetero INTERGENIC
SBS Chr2 3576627 G-A Homo INTERGENIC
SBS Chr2 13800176 T-C Hetero INTERGENIC
SBS Chr2 20755466 G-A Hetero INTERGENIC
SBS Chr2 29263144 G-T Hetero INTRON
SBS Chr3 8419391 C-T Hetero INTERGENIC
SBS Chr3 12292502 T-A Homo INTERGENIC
SBS Chr3 21757197 G-A Homo INTERGENIC
SBS Chr3 23873500 A-T Homo INTERGENIC
SBS Chr3 28822605 A-T Hetero INTERGENIC
SBS Chr3 28954018 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g300900
SBS Chr4 5938946 A-G Hetero INTERGENIC
SBS Chr4 18203656 C-T Hetero INTERGENIC
SBS Chr4 20561219 A-G Homo INTERGENIC
SBS Chr4 31225777 T-A Homo INTERGENIC
SBS Chr5 12408286 C-T Hetero INTERGENIC
SBS Chr5 18748019 A-G Hetero INTERGENIC
SBS Chr5 22628801 C-T Hetero INTERGENIC
SBS Chr5 23166651 T-G Hetero INTERGENIC
SBS Chr5 24200766 A-T Hetero INTERGENIC
SBS Chr6 7969470 C-A Hetero INTRON
SBS Chr6 9918468 T-A Hetero INTERGENIC
SBS Chr7 3559225 A-G Homo INTRON
SBS Chr8 8899251 C-T Hetero INTERGENIC
SBS Chr8 15565946 G-A Hetero INTERGENIC
SBS Chr9 13059569 C-T Homo INTERGENIC
SBS Chr9 15419572 A-G Homo INTERGENIC
SBS Chr9 16109153 G-A Hetero INTRON
SBS Chr9 20311211 A-T Homo INTERGENIC
SBS Chr10 2810076 T-C Homo INTRON
SBS Chr11 4865759 G-A Homo INTERGENIC
SBS Chr11 21989053 A-G Homo INTERGENIC
SBS Chr11 24881253 T-C Homo INTERGENIC
SBS Chr12 8414455 C-G Hetero INTRON

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 2103001 2201000 97999 6
Deletion Chr4 4029001 4137000 107999 8
Deletion Chr1 4358401 4358404 3
Deletion Chr8 9715288 9715290 2
Deletion Chr7 10303814 10303819 5
Deletion Chr10 10338590 10338712 122
Deletion Chr4 16025751 16025762 11
Deletion Chr5 21427941 21427942 1
Deletion Chr11 22621728 22621730 2
Deletion Chr12 24170859 24170860 1 OsKitaake12g194300
Deletion Chr11 24880906 24880914 8
Deletion Chr3 33799819 33799820 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 14881151 14881154 2
Insertion Chr3 30082250 30082253 2
Insertion Chr8 3526599 3526604 4
Insertion Chr9 22665767 22665770 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 6870418 Chr1 44278986

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1081606	C-T	Hetero	START_GAINED
SBS	Chr1	4638733	A-G	Hetero	INTERGENIC
SBS	Chr1	22320600	G-A	Hetero	INTERGENIC
SBS	Chr1	38401574	A-G	Hetero	INTERGENIC
SBS	Chr2	3576627	G-A	Homo	INTERGENIC
SBS	Chr2	13800176	T-C	Hetero	INTERGENIC
SBS	Chr2	20755466	G-A	Hetero	INTERGENIC
SBS	Chr2	29263144	G-T	Hetero	INTRON
SBS	Chr3	8419391	C-T	Hetero	INTERGENIC
SBS	Chr3	12292502	T-A	Homo	INTERGENIC
SBS	Chr3	21757197	G-A	Homo	INTERGENIC
SBS	Chr3	23873500	A-T	Homo	INTERGENIC
SBS	Chr3	28822605	A-T	Hetero	INTERGENIC
SBS	Chr3	28954018	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g300900
SBS	Chr4	5938946	A-G	Hetero	INTERGENIC
SBS	Chr4	18203656	C-T	Hetero	INTERGENIC
SBS	Chr4	20561219	A-G	Homo	INTERGENIC
SBS	Chr4	31225777	T-A	Homo	INTERGENIC
SBS	Chr5	12408286	C-T	Hetero	INTERGENIC
SBS	Chr5	18748019	A-G	Hetero	INTERGENIC
SBS	Chr5	22628801	C-T	Hetero	INTERGENIC
SBS	Chr5	23166651	T-G	Hetero	INTERGENIC
SBS	Chr5	24200766	A-T	Hetero	INTERGENIC
SBS	Chr6	7969470	C-A	Hetero	INTRON
SBS	Chr6	9918468	T-A	Hetero	INTERGENIC
SBS	Chr7	3559225	A-G	Homo	INTRON
SBS	Chr8	8899251	C-T	Hetero	INTERGENIC
SBS	Chr8	15565946	G-A	Hetero	INTERGENIC
SBS	Chr9	13059569	C-T	Homo	INTERGENIC
SBS	Chr9	15419572	A-G	Homo	INTERGENIC
SBS	Chr9	16109153	G-A	Hetero	INTRON
SBS	Chr9	20311211	A-T	Homo	INTERGENIC
SBS	Chr10	2810076	T-C	Homo	INTRON
SBS	Chr11	4865759	G-A	Homo	INTERGENIC
SBS	Chr11	21989053	A-G	Homo	INTERGENIC
SBS	Chr11	24881253	T-C	Homo	INTERGENIC
SBS	Chr12	8414455	C-G	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	2103001	2201000	97999	6
Deletion	Chr4	4029001	4137000	107999	8
Deletion	Chr1	4358401	4358404	3
Deletion	Chr8	9715288	9715290	2
Deletion	Chr7	10303814	10303819	5
Deletion	Chr10	10338590	10338712	122
Deletion	Chr4	16025751	16025762	11
Deletion	Chr5	21427941	21427942	1
Deletion	Chr11	22621728	22621730	2
Deletion	Chr12	24170859	24170860	1	OsKitaake12g194300
Deletion	Chr11	24880906	24880914	8
Deletion	Chr3	33799819	33799820	1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	6870418	Chr1	44278986

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes