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Mutant Information

Mutant Name	FN2107-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2107-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 54

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1703408 A-T Hetero INTERGENIC
SBS Chr1 7406286 T-A Homo INTERGENIC
SBS Chr1 7406287 C-A Homo INTERGENIC
SBS Chr1 7424494 A-G Homo INTERGENIC
SBS Chr1 11187899 A-G Homo INTERGENIC
SBS Chr1 11592932 A-G Homo INTERGENIC
SBS Chr1 30660461 G-T Hetero INTERGENIC
SBS Chr2 63919 T-A Hetero INTERGENIC
SBS Chr2 2570435 G-A Homo INTERGENIC
SBS Chr2 14451637 G-A Hetero INTERGENIC
SBS Chr2 14605721 C-A Hetero INTERGENIC
SBS Chr2 16098554 A-T Hetero INTRON
SBS Chr2 16349736 G-T Hetero INTRON
SBS Chr2 16349737 C-T Hetero INTRON
SBS Chr2 20884394 C-T Hetero INTERGENIC
SBS Chr2 20906715 T-C Hetero INTERGENIC
SBS Chr2 21234524 T-A Hetero UTR_3_PRIME
SBS Chr3 4361769 T-C Hetero INTERGENIC
SBS Chr3 4634514 A-G Hetero INTERGENIC
SBS Chr3 5344212 C-T Hetero INTERGENIC
SBS Chr3 11884121 G-A Homo INTERGENIC
SBS Chr3 13440308 C-G Hetero INTERGENIC
SBS Chr4 11453823 A-G Hetero INTERGENIC
SBS Chr4 12173593 G-A Hetero INTERGENIC
SBS Chr4 17122292 G-A Hetero INTERGENIC
SBS Chr4 17154344 T-C Hetero INTERGENIC
SBS Chr4 22821499 A-T Hetero INTERGENIC
SBS Chr4 34276591 C-G Hetero INTRON
SBS Chr5 14925645 C-G Hetero INTERGENIC
SBS Chr5 22329950 T-A Hetero INTERGENIC
SBS Chr5 22413304 T-C Hetero INTERGENIC
SBS Chr5 29118868 T-A Hetero INTRON
SBS Chr6 14412670 C-T Hetero INTERGENIC
SBS Chr6 14481481 C-T Hetero INTERGENIC
SBS Chr6 20524215 G-A Hetero INTERGENIC
SBS Chr6 23042216 C-T Hetero INTERGENIC
SBS Chr7 12431078 T-A Homo INTERGENIC
SBS Chr7 12631157 G-A Homo INTERGENIC
SBS Chr7 25396913 A-G Hetero UTR_3_PRIME
SBS Chr8 2804978 G-T Hetero INTERGENIC
SBS Chr8 5967849 A-C Hetero INTERGENIC
SBS Chr8 18048496 C-T Homo INTERGENIC
SBS Chr8 20082164 A-C Homo INTRON
SBS Chr8 26369497 A-C Hetero INTERGENIC
SBS Chr9 2605560 C-T Hetero INTERGENIC
SBS Chr9 11884245 A-T Homo INTERGENIC
SBS Chr9 13871886 G-A Hetero INTERGENIC
SBS Chr9 17832754 C-A Hetero INTERGENIC
SBS Chr10 709861 G-A Hetero INTERGENIC
SBS Chr10 709862 C-A Hetero INTERGENIC
SBS Chr10 12939488 C-T Homo INTERGENIC
SBS Chr11 17897904 C-T Hetero INTERGENIC
SBS Chr11 26872421 A-C Homo INTERGENIC
SBS Chr12 19878516 T-A Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 2978856 2978866 10 OsKitaake08g032900
Deletion Chr6 3941118 3941125 7 OsKitaake06g054800
Deletion Chr1 7413173 7413175 2
Deletion Chr2 8264061 8264064 3
Deletion Chr9 10391656 10391664 8
Deletion Chr3 13379036 13379037 1
Deletion Chr6 16393001 16517000 123999 6
Deletion Chr12 18725581 18725582 1
Deletion Chr9 19042479 19042481 2
Deletion Chr1 24639318 24639320 2
Deletion Chr11 26843469 26843472 3
Deletion Chr11 28021695 28021696 1
Deletion Chr1 35432337 35432339 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 43984359 43984362 2
Insertion Chr6 6569154 6569157 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 155397 616205
Inversion Chr1 11150736 11605689
Inversion Chr1 11150771 11605692
Inversion Chr3 11887559 12154298
Inversion Chr3 27140743 27150266

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 1545967 Chr3 11887555
Translocation Chr8 1546786 Chr3 12154291 OsKitaake08g019200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1703408	A-T	Hetero	INTERGENIC
SBS	Chr1	7406286	T-A	Homo	INTERGENIC
SBS	Chr1	7406287	C-A	Homo	INTERGENIC
SBS	Chr1	7424494	A-G	Homo	INTERGENIC
SBS	Chr1	11187899	A-G	Homo	INTERGENIC
SBS	Chr1	11592932	A-G	Homo	INTERGENIC
SBS	Chr1	30660461	G-T	Hetero	INTERGENIC
SBS	Chr2	63919	T-A	Hetero	INTERGENIC
SBS	Chr2	2570435	G-A	Homo	INTERGENIC
SBS	Chr2	14451637	G-A	Hetero	INTERGENIC
SBS	Chr2	14605721	C-A	Hetero	INTERGENIC
SBS	Chr2	16098554	A-T	Hetero	INTRON
SBS	Chr2	16349736	G-T	Hetero	INTRON
SBS	Chr2	16349737	C-T	Hetero	INTRON
SBS	Chr2	20884394	C-T	Hetero	INTERGENIC
SBS	Chr2	20906715	T-C	Hetero	INTERGENIC
SBS	Chr2	21234524	T-A	Hetero	UTR_3_PRIME
SBS	Chr3	4361769	T-C	Hetero	INTERGENIC
SBS	Chr3	4634514	A-G	Hetero	INTERGENIC
SBS	Chr3	5344212	C-T	Hetero	INTERGENIC
SBS	Chr3	11884121	G-A	Homo	INTERGENIC
SBS	Chr3	13440308	C-G	Hetero	INTERGENIC
SBS	Chr4	11453823	A-G	Hetero	INTERGENIC
SBS	Chr4	12173593	G-A	Hetero	INTERGENIC
SBS	Chr4	17122292	G-A	Hetero	INTERGENIC
SBS	Chr4	17154344	T-C	Hetero	INTERGENIC
SBS	Chr4	22821499	A-T	Hetero	INTERGENIC
SBS	Chr4	34276591	C-G	Hetero	INTRON
SBS	Chr5	14925645	C-G	Hetero	INTERGENIC
SBS	Chr5	22329950	T-A	Hetero	INTERGENIC
SBS	Chr5	22413304	T-C	Hetero	INTERGENIC
SBS	Chr5	29118868	T-A	Hetero	INTRON
SBS	Chr6	14412670	C-T	Hetero	INTERGENIC
SBS	Chr6	14481481	C-T	Hetero	INTERGENIC
SBS	Chr6	20524215	G-A	Hetero	INTERGENIC
SBS	Chr6	23042216	C-T	Hetero	INTERGENIC
SBS	Chr7	12431078	T-A	Homo	INTERGENIC
SBS	Chr7	12631157	G-A	Homo	INTERGENIC
SBS	Chr7	25396913	A-G	Hetero	UTR_3_PRIME
SBS	Chr8	2804978	G-T	Hetero	INTERGENIC
SBS	Chr8	5967849	A-C	Hetero	INTERGENIC
SBS	Chr8	18048496	C-T	Homo	INTERGENIC
SBS	Chr8	20082164	A-C	Homo	INTRON
SBS	Chr8	26369497	A-C	Hetero	INTERGENIC
SBS	Chr9	2605560	C-T	Hetero	INTERGENIC
SBS	Chr9	11884245	A-T	Homo	INTERGENIC
SBS	Chr9	13871886	G-A	Hetero	INTERGENIC
SBS	Chr9	17832754	C-A	Hetero	INTERGENIC
SBS	Chr10	709861	G-A	Hetero	INTERGENIC
SBS	Chr10	709862	C-A	Hetero	INTERGENIC
SBS	Chr10	12939488	C-T	Homo	INTERGENIC
SBS	Chr11	17897904	C-T	Hetero	INTERGENIC
SBS	Chr11	26872421	A-C	Homo	INTERGENIC
SBS	Chr12	19878516	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	2978856	2978866	10	OsKitaake08g032900
Deletion	Chr6	3941118	3941125	7	OsKitaake06g054800
Deletion	Chr1	7413173	7413175	2
Deletion	Chr2	8264061	8264064	3
Deletion	Chr9	10391656	10391664	8
Deletion	Chr3	13379036	13379037	1
Deletion	Chr6	16393001	16517000	123999	6
Deletion	Chr12	18725581	18725582	1
Deletion	Chr9	19042479	19042481	2
Deletion	Chr1	24639318	24639320	2
Deletion	Chr11	26843469	26843472	3
Deletion	Chr11	28021695	28021696	1
Deletion	Chr1	35432337	35432339	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	155397	616205
Inversion	Chr1	11150736	11605689
Inversion	Chr1	11150771	11605692
Inversion	Chr3	11887559	12154298
Inversion	Chr3	27140743	27150266

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes