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Mutant Information

Mutant Name	FN2108-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2108-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 817227 G-T Homo NON_SYNONYMOUS_CODING OsKitaake01g008908
SBS Chr1 817228 A-T Homo NON_SYNONYMOUS_CODING OsKitaake01g008908
SBS Chr1 25600584 C-G Hetero INTERGENIC
SBS Chr1 32699723 A-T Hetero INTRON
SBS Chr2 11809852 G-A Homo INTRON
SBS Chr3 7462231 A-G Hetero INTERGENIC
SBS Chr3 14107653 G-A Hetero SYNONYMOUS_CODING
SBS Chr4 18020204 C-T Homo INTERGENIC
SBS Chr4 21281497 A-T Hetero INTERGENIC
SBS Chr4 26659894 C-T Hetero INTRON
SBS Chr4 26789355 G-A Hetero INTRON
SBS Chr4 29909559 C-T Hetero INTERGENIC
SBS Chr4 35776135 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g305800
SBS Chr4 36761541 A-T Hetero INTRON
SBS Chr5 15542985 G-A Homo INTERGENIC
SBS Chr5 28715125 G-A Homo INTERGENIC
SBS Chr6 8811998 T-G Homo INTERGENIC
SBS Chr6 17515629 G-T Hetero INTERGENIC
SBS Chr7 4587484 T-G Hetero INTRON
SBS Chr8 8608892 C-T Hetero INTERGENIC
SBS Chr8 27854840 G-C Homo INTERGENIC
SBS Chr9 10068841 G-A Hetero INTERGENIC
SBS Chr9 17873394 C-T Hetero INTERGENIC
SBS Chr9 19284008 G-C Hetero INTERGENIC
SBS Chr10 5909653 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake10g040500
SBS Chr10 7237808 C-T Homo INTERGENIC
SBS Chr10 7489370 T-G Homo INTERGENIC
SBS Chr11 11253584 A-G Homo INTERGENIC
SBS Chr11 13385234 G-C Homo INTERGENIC
SBS Chr11 27499902 G-C Hetero INTERGENIC
SBS Chr11 27673628 G-A Hetero INTRON
SBS Chr12 23760058 T-C Hetero INTERGENIC
SBS Chr12 24457715 C-G Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 485427 485428 1
Deletion Chr12 3682346 3682347 1
Deletion Chr10 6468768 6468772 4
Deletion Chr1 6908403 6908404 1 OsKitaake01g086900
Deletion Chr6 12597001 12746000 148999 20
Deletion Chr6 12783001 12949000 165999 15
Deletion Chr7 13786303 13786305 2
Deletion Chr8 16182085 16182089 4
Deletion Chr3 16739732 16739904 172
Deletion Chr9 21249001 21253000 3999 OsKitaake09g183900
Deletion Chr12 22464678 22464679 1
Deletion Chr4 28099078 28099080 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 22627051 22627055 3
Insertion Chr3 23549922 23549925 2
Insertion Chr11 15961549 15961552 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 5216160 5300318 2
Inversion Chr7 5231149 5300321 OsKitaake07g064500

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 9898543 Chr10 18747583 OsKitaake10g133600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	817227	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g008908
SBS	Chr1	817228	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g008908
SBS	Chr1	25600584	C-G	Hetero	INTERGENIC
SBS	Chr1	32699723	A-T	Hetero	INTRON
SBS	Chr2	11809852	G-A	Homo	INTRON
SBS	Chr3	7462231	A-G	Hetero	INTERGENIC
SBS	Chr3	14107653	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr4	18020204	C-T	Homo	INTERGENIC
SBS	Chr4	21281497	A-T	Hetero	INTERGENIC
SBS	Chr4	26659894	C-T	Hetero	INTRON
SBS	Chr4	26789355	G-A	Hetero	INTRON
SBS	Chr4	29909559	C-T	Hetero	INTERGENIC
SBS	Chr4	35776135	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g305800
SBS	Chr4	36761541	A-T	Hetero	INTRON
SBS	Chr5	15542985	G-A	Homo	INTERGENIC
SBS	Chr5	28715125	G-A	Homo	INTERGENIC
SBS	Chr6	8811998	T-G	Homo	INTERGENIC
SBS	Chr6	17515629	G-T	Hetero	INTERGENIC
SBS	Chr7	4587484	T-G	Hetero	INTRON
SBS	Chr8	8608892	C-T	Hetero	INTERGENIC
SBS	Chr8	27854840	G-C	Homo	INTERGENIC
SBS	Chr9	10068841	G-A	Hetero	INTERGENIC
SBS	Chr9	17873394	C-T	Hetero	INTERGENIC
SBS	Chr9	19284008	G-C	Hetero	INTERGENIC
SBS	Chr10	5909653	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g040500
SBS	Chr10	7237808	C-T	Homo	INTERGENIC
SBS	Chr10	7489370	T-G	Homo	INTERGENIC
SBS	Chr11	11253584	A-G	Homo	INTERGENIC
SBS	Chr11	13385234	G-C	Homo	INTERGENIC
SBS	Chr11	27499902	G-C	Hetero	INTERGENIC
SBS	Chr11	27673628	G-A	Hetero	INTRON
SBS	Chr12	23760058	T-C	Hetero	INTERGENIC
SBS	Chr12	24457715	C-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	485427	485428	1
Deletion	Chr12	3682346	3682347	1
Deletion	Chr10	6468768	6468772	4
Deletion	Chr1	6908403	6908404	1	OsKitaake01g086900
Deletion	Chr6	12597001	12746000	148999	20
Deletion	Chr6	12783001	12949000	165999	15
Deletion	Chr7	13786303	13786305	2
Deletion	Chr8	16182085	16182089	4
Deletion	Chr3	16739732	16739904	172
Deletion	Chr9	21249001	21253000	3999	OsKitaake09g183900
Deletion	Chr12	22464678	22464679	1
Deletion	Chr4	28099078	28099080	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	5216160	5300318	2
Inversion	Chr7	5231149	5300321	OsKitaake07g064500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes