Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN2110-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2110-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
|
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 13669824 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 41215291 | C-A | Homo | INTERGENIC | |
| SBS | Chr2 | 19978267 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 7757665 | T-A | Hetero | INTRON | |
| SBS | Chr3 | 23033814 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 30196645 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 6820227 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 18282691 | A-T | Homo | INTERGENIC | |
| SBS | Chr4 | 36148801 | C-A | Hetero | INTRON | |
| SBS | Chr4 | 36148802 | A-T | Hetero | INTRON | |
| SBS | Chr5 | 4161510 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 24740427 | T-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 27575373 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 10481233 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 10603794 | A-T | Homo | INTRON | |
| SBS | Chr7 | 24998704 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 27613221 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 28239592 | A-T | Hetero | START_GAINED | |
| SBS | Chr9 | 14302803 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 17391265 | T-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 5778911 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 19627133 | T-C | Homo | INTERGENIC | |
| SBS | Chr11 | 383662 | A-C | Hetero | INTRON | |
| SBS | Chr11 | 13085465 | T-C | Homo | INTERGENIC | |
| SBS | Chr11 | 28997975 | A-T | Hetero | INTRON | |
| SBS | Chr12 | 12688820 | G-T | Hetero | INTERGENIC |
Deletions: 16
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr11 | 417933 | 417941 | 8 | |
| Deletion | Chr4 | 2671162 | 2671163 | 1 | |
| Deletion | Chr5 | 4354330 | 4354331 | 1 | |
| Deletion | Chr7 | 8481513 | 8481515 | 2 | |
| Deletion | Chr8 | 11210170 | 11210171 | 1 | |
| Deletion | Chr6 | 13519835 | 13519836 | 1 | |
| Deletion | Chr1 | 17658186 | 17658187 | 1 | |
| Deletion | Chr4 | 17978001 | 17985000 | 6999 | 2 |
| Deletion | Chr5 | 19570811 | 19570815 | 4 | |
| Deletion | Chr10 | 19716579 | 19716580 | 1 | |
| Deletion | Chr6 | 20204336 | 20204384 | 48 | |
| Deletion | Chr6 | 20494740 | 20494747 | 7 | |
| Deletion | Chr11 | 20756054 | 20756060 | 6 | |
| Deletion | Chr5 | 23131596 | 23131597 | 1 | OsKitaake05g192900 |
| Deletion | Chr1 | 23890014 | 23890019 | 5 | |
| Deletion | Chr7 | 28930803 | 28930815 | 12 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 17392214 | 17392218 | 3 | |
| Insertion | Chr4 | 9574522 | 9574524 | 1 |
Inversions: 6
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr2 | 4769028 | 4803265 | OsKitaake02g066000 |
| Inversion | Chr2 | 4769032 | 4803269 | OsKitaake02g066000 |
| Inversion | Chr4 | 8654972 | 9163036 | OsKitaake04g044100 |
| Inversion | Chr4 | 8654975 | 9163039 | OsKitaake04g044100 |
| Inversion | Chr4 | 17910616 | 17977926 | OsKitaake04g090500 |
| Inversion | Chr4 | 17910621 | 17985896 |