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Mutant Information

Mutant Name	FN2112-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2112-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 16252257 G-A Hetero INTERGENIC
SBS Chr1 20800245 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g203900
SBS Chr1 22552117 C-T Hetero INTERGENIC
SBS Chr1 32108415 C-T Hetero INTERGENIC
SBS Chr1 33845869 T-C Hetero INTERGENIC
SBS Chr2 2855694 T-C Hetero INTRON
SBS Chr2 14459244 A-T Homo INTERGENIC
SBS Chr2 14459245 C-T Homo INTERGENIC
SBS Chr2 34721309 A-G Homo INTERGENIC
SBS Chr3 24220731 G-A Hetero INTERGENIC
SBS Chr3 24223314 T-C Hetero INTERGENIC
SBS Chr3 31036628 G-A Homo INTRON
SBS Chr3 31210407 T-A Hetero INTRON
SBS Chr4 12384621 C-T Hetero INTERGENIC
SBS Chr4 18684331 G-A Hetero INTERGENIC
SBS Chr4 24578700 A-G Hetero UTR_3_PRIME
SBS Chr4 32867444 T-A Hetero INTERGENIC
SBS Chr5 7288181 T-A Hetero UTR_3_PRIME
SBS Chr5 11372243 C-T Hetero INTERGENIC
SBS Chr5 26158795 G-C Hetero INTRON
SBS Chr5 29699731 C-T Hetero INTERGENIC
SBS Chr6 15862108 G-A Hetero INTERGENIC
SBS Chr6 30906640 G-A Hetero INTERGENIC
SBS Chr7 23070114 C-T Hetero UTR_3_PRIME
SBS Chr7 25444165 A-T Hetero INTERGENIC
SBS Chr7 26528642 A-T Hetero INTERGENIC
SBS Chr8 2564001 A-C Hetero INTRON
SBS Chr8 15701001 G-A Hetero INTERGENIC
SBS Chr9 358078 T-C Homo INTERGENIC
SBS Chr9 12242802 C-G Homo INTRON
SBS Chr10 8872269 C-G Hetero INTERGENIC
SBS Chr10 10834236 T-C Hetero INTERGENIC
SBS Chr12 5688834 C-A Hetero INTERGENIC
SBS Chr12 7084972 G-A Homo INTERGENIC
SBS Chr12 13345188 A-T Hetero INTRON
SBS Chr12 17010601 C-T Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 1867850 1867852 2
Deletion Chr5 2887857 2887863 6
Deletion Chr12 7080071 7080077 6
Deletion Chr12 9434001 9465000 30999
Deletion Chr5 9710684 9710705 21
Deletion Chr10 12052870 12052871 1
Deletion Chr9 12788831 12788839 8
Deletion Chr1 17183686 17183851 165
Deletion Chr11 23772643 23772644 1
Deletion Chr4 24414222 24414227 5
Deletion Chr8 25523352 25523356 4

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 7359262 7359265 2
Insertion Chr2 26203275 26203279 3
Insertion Chr11 225735 225738 2
Insertion Chr11 27947065 27947069 3

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 9437683 10258634 OsKitaake12g096300
Inversion Chr3 17269381 17624546
Inversion Chr3 17269385 17624579

Translocations: 8

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 7997098 Chr4 18467838
Translocation Chr12 7997105 Chr4 18464857
Translocation Chr7 12902670 Chr2 3744351
Translocation Chr7 12902972 Chr2 3744348
Translocation Chr4 15706870 Chr1 10174303 OsKitaake01g128200
Translocation Chr4 15707690 Chr1 10174307 OsKitaake01g128200
Translocation Chr5 20381607 Chr1 25077431 OsKitaake01g242700
Translocation Chr5 20382501 Chr1 25077433 OsKitaake01g242700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16252257	G-A	Hetero	INTERGENIC
SBS	Chr1	20800245	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g203900
SBS	Chr1	22552117	C-T	Hetero	INTERGENIC
SBS	Chr1	32108415	C-T	Hetero	INTERGENIC
SBS	Chr1	33845869	T-C	Hetero	INTERGENIC
SBS	Chr2	2855694	T-C	Hetero	INTRON
SBS	Chr2	14459244	A-T	Homo	INTERGENIC
SBS	Chr2	14459245	C-T	Homo	INTERGENIC
SBS	Chr2	34721309	A-G	Homo	INTERGENIC
SBS	Chr3	24220731	G-A	Hetero	INTERGENIC
SBS	Chr3	24223314	T-C	Hetero	INTERGENIC
SBS	Chr3	31036628	G-A	Homo	INTRON
SBS	Chr3	31210407	T-A	Hetero	INTRON
SBS	Chr4	12384621	C-T	Hetero	INTERGENIC
SBS	Chr4	18684331	G-A	Hetero	INTERGENIC
SBS	Chr4	24578700	A-G	Hetero	UTR_3_PRIME
SBS	Chr4	32867444	T-A	Hetero	INTERGENIC
SBS	Chr5	7288181	T-A	Hetero	UTR_3_PRIME
SBS	Chr5	11372243	C-T	Hetero	INTERGENIC
SBS	Chr5	26158795	G-C	Hetero	INTRON
SBS	Chr5	29699731	C-T	Hetero	INTERGENIC
SBS	Chr6	15862108	G-A	Hetero	INTERGENIC
SBS	Chr6	30906640	G-A	Hetero	INTERGENIC
SBS	Chr7	23070114	C-T	Hetero	UTR_3_PRIME
SBS	Chr7	25444165	A-T	Hetero	INTERGENIC
SBS	Chr7	26528642	A-T	Hetero	INTERGENIC
SBS	Chr8	2564001	A-C	Hetero	INTRON
SBS	Chr8	15701001	G-A	Hetero	INTERGENIC
SBS	Chr9	358078	T-C	Homo	INTERGENIC
SBS	Chr9	12242802	C-G	Homo	INTRON
SBS	Chr10	8872269	C-G	Hetero	INTERGENIC
SBS	Chr10	10834236	T-C	Hetero	INTERGENIC
SBS	Chr12	5688834	C-A	Hetero	INTERGENIC
SBS	Chr12	7084972	G-A	Homo	INTERGENIC
SBS	Chr12	13345188	A-T	Hetero	INTRON
SBS	Chr12	17010601	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	1867850	1867852	2
Deletion	Chr5	2887857	2887863	6
Deletion	Chr12	7080071	7080077	6
Deletion	Chr12	9434001	9465000	30999
Deletion	Chr5	9710684	9710705	21
Deletion	Chr10	12052870	12052871	1
Deletion	Chr9	12788831	12788839	8
Deletion	Chr1	17183686	17183851	165
Deletion	Chr11	23772643	23772644	1
Deletion	Chr4	24414222	24414227	5
Deletion	Chr8	25523352	25523356	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	9437683	10258634	OsKitaake12g096300
Inversion	Chr3	17269381	17624546
Inversion	Chr3	17269385	17624579

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes