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Mutant Information

Mutant Name	FN2114-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2114-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 288256 A-T Homo INTRON
SBS Chr1 834467 A-G Hetero INTERGENIC
SBS Chr1 4904650 A-G Hetero INTERGENIC
SBS Chr1 21980311 G-A Homo INTERGENIC
SBS Chr1 23703836 C-T Homo INTERGENIC
SBS Chr1 32082207 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g323100
SBS Chr1 43614626 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g484300
SBS Chr2 10339131 G-A Hetero INTERGENIC
SBS Chr2 30823131 G-T Homo UTR_3_PRIME
SBS Chr2 33219691 A-T Homo INTRON
SBS Chr3 11279317 C-A Homo INTERGENIC
SBS Chr3 13301136 A-C Homo INTERGENIC
SBS Chr3 26285367 G-A Hetero INTERGENIC
SBS Chr3 28864752 A-C Homo INTERGENIC
SBS Chr3 31732597 T-A Hetero UTR_3_PRIME
SBS Chr4 10538655 G-A Hetero INTRON
SBS Chr4 13448965 A-T Hetero INTERGENIC
SBS Chr4 19293465 G-T Homo INTERGENIC
SBS Chr4 25680413 G-T Hetero INTERGENIC
SBS Chr4 28226582 T-A Hetero INTERGENIC
SBS Chr4 31734006 G-T Homo INTRON
SBS Chr4 33630126 C-T Hetero INTERGENIC
SBS Chr5 29556233 T-C Hetero UTR_3_PRIME
SBS Chr6 7672826 G-A Hetero INTERGENIC
SBS Chr6 11862763 C-A Homo INTERGENIC
SBS Chr7 11007354 G-T Hetero INTERGENIC
SBS Chr7 16648162 A-G Hetero INTERGENIC
SBS Chr7 18488564 C-T Homo INTERGENIC
SBS Chr8 2393135 A-G Hetero SYNONYMOUS_CODING
SBS Chr8 6429563 A-T Homo INTERGENIC
SBS Chr8 7452727 C-A Homo INTERGENIC
SBS Chr8 10087137 C-T Hetero INTERGENIC
SBS Chr8 13424432 T-A Homo INTERGENIC
SBS Chr8 25521968 G-A Hetero INTERGENIC
SBS Chr10 1090275 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake10g008100
SBS Chr10 1109250 G-T Hetero INTERGENIC
SBS Chr11 8773235 G-A Hetero INTERGENIC
SBS Chr11 9918025 G-A Hetero INTERGENIC
SBS Chr12 6131073 G-A Hetero INTERGENIC
SBS Chr12 12789410 A-G Hetero INTERGENIC
SBS Chr12 20090991 C-T Hetero INTERGENIC
SBS Chr12 22474616 C-T Hetero INTRON

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 250670 250671 1
Deletion Chr8 5929731 5929732 1
Deletion Chr8 13454306 13454308 2 OsKitaake08g110460
Deletion Chr10 13821001 13917000 95999 8
Deletion Chr6 15731760 15731761 1
Deletion Chr6 20957504 20957506 2
Deletion Chr5 22262454 22262768 314 2
Deletion Chr4 33092968 33092976 8

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 7616162 7616165 2
Insertion Chr3 9650240 9650243 2
Insertion Chr3 20974570 20974572 1
Insertion Chr6 2591462 2591465 2
Insertion Chr6 5139506 5139508 1
Insertion Chr6 16020336 16020338 1 OsKitaake06g154000

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 22114291 Chr3 25725303

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	288256	A-T	Homo	INTRON
SBS	Chr1	834467	A-G	Hetero	INTERGENIC
SBS	Chr1	4904650	A-G	Hetero	INTERGENIC
SBS	Chr1	21980311	G-A	Homo	INTERGENIC
SBS	Chr1	23703836	C-T	Homo	INTERGENIC
SBS	Chr1	32082207	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g323100
SBS	Chr1	43614626	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g484300
SBS	Chr2	10339131	G-A	Hetero	INTERGENIC
SBS	Chr2	30823131	G-T	Homo	UTR_3_PRIME
SBS	Chr2	33219691	A-T	Homo	INTRON
SBS	Chr3	11279317	C-A	Homo	INTERGENIC
SBS	Chr3	13301136	A-C	Homo	INTERGENIC
SBS	Chr3	26285367	G-A	Hetero	INTERGENIC
SBS	Chr3	28864752	A-C	Homo	INTERGENIC
SBS	Chr3	31732597	T-A	Hetero	UTR_3_PRIME
SBS	Chr4	10538655	G-A	Hetero	INTRON
SBS	Chr4	13448965	A-T	Hetero	INTERGENIC
SBS	Chr4	19293465	G-T	Homo	INTERGENIC
SBS	Chr4	25680413	G-T	Hetero	INTERGENIC
SBS	Chr4	28226582	T-A	Hetero	INTERGENIC
SBS	Chr4	31734006	G-T	Homo	INTRON
SBS	Chr4	33630126	C-T	Hetero	INTERGENIC
SBS	Chr5	29556233	T-C	Hetero	UTR_3_PRIME
SBS	Chr6	7672826	G-A	Hetero	INTERGENIC
SBS	Chr6	11862763	C-A	Homo	INTERGENIC
SBS	Chr7	11007354	G-T	Hetero	INTERGENIC
SBS	Chr7	16648162	A-G	Hetero	INTERGENIC
SBS	Chr7	18488564	C-T	Homo	INTERGENIC
SBS	Chr8	2393135	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr8	6429563	A-T	Homo	INTERGENIC
SBS	Chr8	7452727	C-A	Homo	INTERGENIC
SBS	Chr8	10087137	C-T	Hetero	INTERGENIC
SBS	Chr8	13424432	T-A	Homo	INTERGENIC
SBS	Chr8	25521968	G-A	Hetero	INTERGENIC
SBS	Chr10	1090275	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g008100
SBS	Chr10	1109250	G-T	Hetero	INTERGENIC
SBS	Chr11	8773235	G-A	Hetero	INTERGENIC
SBS	Chr11	9918025	G-A	Hetero	INTERGENIC
SBS	Chr12	6131073	G-A	Hetero	INTERGENIC
SBS	Chr12	12789410	A-G	Hetero	INTERGENIC
SBS	Chr12	20090991	C-T	Hetero	INTERGENIC
SBS	Chr12	22474616	C-T	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	250670	250671	1
Deletion	Chr8	5929731	5929732	1
Deletion	Chr8	13454306	13454308	2	OsKitaake08g110460
Deletion	Chr10	13821001	13917000	95999	8
Deletion	Chr6	15731760	15731761	1
Deletion	Chr6	20957504	20957506	2
Deletion	Chr5	22262454	22262768	314	2
Deletion	Chr4	33092968	33092976	8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	22114291	Chr3	25725303

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes