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Mutant Information

Mutant Name	FN2115-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2115-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 22

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 17033710 T-A Homo INTRON
SBS Chr2 10855041 T-A Homo INTRON
SBS Chr2 20328031 T-G Hetero INTERGENIC
SBS Chr2 32575174 G-A Homo INTERGENIC
SBS Chr3 22300041 G-A Hetero INTERGENIC
SBS Chr3 31803007 A-T Hetero INTRON
SBS Chr3 35549239 A-G Hetero INTERGENIC
SBS Chr3 36578682 C-T Hetero INTRON
SBS Chr4 13865616 A-G Homo INTERGENIC
SBS Chr5 6531469 A-T Hetero INTERGENIC
SBS Chr6 8551915 A-G Hetero INTERGENIC
SBS Chr6 29511845 G-A Homo INTRON
SBS Chr7 10404372 G-A Homo INTERGENIC
SBS Chr8 11022218 G-A Hetero INTERGENIC
SBS Chr8 26773408 C-T Homo INTERGENIC
SBS Chr9 8416100 G-C Hetero INTERGENIC
SBS Chr10 1564555 C-G Hetero INTERGENIC
SBS Chr11 9322735 A-G Homo INTRON
SBS Chr11 20107006 A-G Hetero INTERGENIC
SBS Chr11 23873367 C-T Hetero INTERGENIC
SBS Chr12 757622 T-G Hetero INTERGENIC
SBS Chr12 24085087 G-A Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 1702643 1702659 16
Deletion Chr4 3277364 3277366 2
Deletion Chr9 3547442 3547447 5
Deletion Chr4 4177392 4177402 10
Deletion Chr3 4569870 4569875 5 OsKitaake03g066100
Deletion Chr2 4925163 4925164 1 OsKitaake02g068400
Deletion Chr7 6062848 6062857 9
Deletion Chr8 7616461 7616469 8
Deletion Chr9 8699194 8699196 2
Deletion Chr9 13019061 13019063 2
Deletion Chr6 14056211 14056232 21
Deletion Chr9 19203783 19203785 2
Deletion Chr5 23277001 23342000 64999 8
Deletion Chr2 24076906 24076907 1
Deletion Chr6 24356958 24356964 6
Deletion Chr12 25420447 25420456 9 OsKitaake12g208600

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 8904295 8904298 2
Insertion Chr7 23637583 23637587 3
Insertion Chr3 6885482 6885485 2 OsKitaake03g097400

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 12694766 12973873
Inversion Chr4 30502356 30620665
Inversion Chr4 30502370 30620674

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17033710	T-A	Homo	INTRON
SBS	Chr2	10855041	T-A	Homo	INTRON
SBS	Chr2	20328031	T-G	Hetero	INTERGENIC
SBS	Chr2	32575174	G-A	Homo	INTERGENIC
SBS	Chr3	22300041	G-A	Hetero	INTERGENIC
SBS	Chr3	31803007	A-T	Hetero	INTRON
SBS	Chr3	35549239	A-G	Hetero	INTERGENIC
SBS	Chr3	36578682	C-T	Hetero	INTRON
SBS	Chr4	13865616	A-G	Homo	INTERGENIC
SBS	Chr5	6531469	A-T	Hetero	INTERGENIC
SBS	Chr6	8551915	A-G	Hetero	INTERGENIC
SBS	Chr6	29511845	G-A	Homo	INTRON
SBS	Chr7	10404372	G-A	Homo	INTERGENIC
SBS	Chr8	11022218	G-A	Hetero	INTERGENIC
SBS	Chr8	26773408	C-T	Homo	INTERGENIC
SBS	Chr9	8416100	G-C	Hetero	INTERGENIC
SBS	Chr10	1564555	C-G	Hetero	INTERGENIC
SBS	Chr11	9322735	A-G	Homo	INTRON
SBS	Chr11	20107006	A-G	Hetero	INTERGENIC
SBS	Chr11	23873367	C-T	Hetero	INTERGENIC
SBS	Chr12	757622	T-G	Hetero	INTERGENIC
SBS	Chr12	24085087	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	1702643	1702659	16
Deletion	Chr4	3277364	3277366	2
Deletion	Chr9	3547442	3547447	5
Deletion	Chr4	4177392	4177402	10
Deletion	Chr3	4569870	4569875	5	OsKitaake03g066100
Deletion	Chr2	4925163	4925164	1	OsKitaake02g068400
Deletion	Chr7	6062848	6062857	9
Deletion	Chr8	7616461	7616469	8
Deletion	Chr9	8699194	8699196	2
Deletion	Chr9	13019061	13019063	2
Deletion	Chr6	14056211	14056232	21
Deletion	Chr9	19203783	19203785	2
Deletion	Chr5	23277001	23342000	64999	8
Deletion	Chr2	24076906	24076907	1
Deletion	Chr6	24356958	24356964	6
Deletion	Chr12	25420447	25420456	9	OsKitaake12g208600

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	12694766	12973873
Inversion	Chr4	30502356	30620665
Inversion	Chr4	30502370	30620674

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes