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Mutant Information

Mutant Name	FN2117-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2117-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4119852 G-T Hetero INTERGENIC
SBS Chr1 13403758 C-G Hetero INTERGENIC
SBS Chr1 24214133 T-A Hetero INTERGENIC
SBS Chr1 24214134 T-A Hetero INTERGENIC
SBS Chr2 19414374 G-C Homo INTERGENIC
SBS Chr2 23192500 A-G Hetero INTERGENIC
SBS Chr2 25108597 C-T Hetero INTERGENIC
SBS Chr2 30551025 C-T Hetero INTERGENIC
SBS Chr4 10715426 A-G Hetero INTERGENIC
SBS Chr4 19268928 T-C Homo INTERGENIC
SBS Chr4 33376980 T-A Hetero INTERGENIC
SBS Chr4 36442507 C-T Hetero INTERGENIC
SBS Chr5 30202290 G-A Hetero INTERGENIC
SBS Chr6 13971932 C-A Hetero INTRON
SBS Chr7 7100279 G-C Hetero INTERGENIC
SBS Chr7 21714399 G-A Hetero INTERGENIC
SBS Chr7 21763250 A-G Hetero INTERGENIC
SBS Chr8 7597192 T-C Homo INTERGENIC
SBS Chr9 19645169 T-C Hetero INTERGENIC
SBS Chr10 399746 A-T Hetero INTERGENIC
SBS Chr10 639850 A-G Hetero INTERGENIC
SBS Chr10 2755915 C-T Hetero INTERGENIC
SBS Chr10 20574107 G-A Hetero INTERGENIC
SBS Chr11 6766951 C-T Hetero INTERGENIC
SBS Chr12 19665039 C-T Hetero INTERGENIC
SBS Chr12 23362752 C-A Homo UTR_5_PRIME

Deletions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 12991964 12992031 67
Deletion Chr7 22282317 22282318 1
Deletion Chr11 29255869 29255873 4

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 18420497 18420500 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4119852	G-T	Hetero	INTERGENIC
SBS	Chr1	13403758	C-G	Hetero	INTERGENIC
SBS	Chr1	24214133	T-A	Hetero	INTERGENIC
SBS	Chr1	24214134	T-A	Hetero	INTERGENIC
SBS	Chr2	19414374	G-C	Homo	INTERGENIC
SBS	Chr2	23192500	A-G	Hetero	INTERGENIC
SBS	Chr2	25108597	C-T	Hetero	INTERGENIC
SBS	Chr2	30551025	C-T	Hetero	INTERGENIC
SBS	Chr4	10715426	A-G	Hetero	INTERGENIC
SBS	Chr4	19268928	T-C	Homo	INTERGENIC
SBS	Chr4	33376980	T-A	Hetero	INTERGENIC
SBS	Chr4	36442507	C-T	Hetero	INTERGENIC
SBS	Chr5	30202290	G-A	Hetero	INTERGENIC
SBS	Chr6	13971932	C-A	Hetero	INTRON
SBS	Chr7	7100279	G-C	Hetero	INTERGENIC
SBS	Chr7	21714399	G-A	Hetero	INTERGENIC
SBS	Chr7	21763250	A-G	Hetero	INTERGENIC
SBS	Chr8	7597192	T-C	Homo	INTERGENIC
SBS	Chr9	19645169	T-C	Hetero	INTERGENIC
SBS	Chr10	399746	A-T	Hetero	INTERGENIC
SBS	Chr10	639850	A-G	Hetero	INTERGENIC
SBS	Chr10	2755915	C-T	Hetero	INTERGENIC
SBS	Chr10	20574107	G-A	Hetero	INTERGENIC
SBS	Chr11	6766951	C-T	Hetero	INTERGENIC
SBS	Chr12	19665039	C-T	Hetero	INTERGENIC
SBS	Chr12	23362752	C-A	Homo	UTR_5_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	12991964	12992031	67
Deletion	Chr7	22282317	22282318	1
Deletion	Chr11	29255869	29255873	4

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes