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Mutant Information

Mutant Name	FN2122-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2122-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1961094 C-A Hetero INTERGENIC
SBS Chr1 14909856 T-C Homo INTERGENIC
SBS Chr1 33760567 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g346600
SBS Chr1 41549960 C-A Hetero INTRON
SBS Chr2 8917861 C-T Hetero INTERGENIC
SBS Chr2 29997897 T-A Hetero INTERGENIC
SBS Chr2 33155664 G-A Hetero UTR_5_PRIME
SBS Chr3 17740362 G-A Hetero INTERGENIC
SBS Chr3 19829400 A-T Hetero INTERGENIC
SBS Chr3 23145817 G-A Hetero INTERGENIC
SBS Chr4 12029226 G-T Hetero INTERGENIC
SBS Chr4 12764198 G-T Homo INTRON
SBS Chr4 18491248 G-T Hetero INTERGENIC
SBS Chr4 18491249 G-T Hetero INTERGENIC
SBS Chr4 20126377 C-T Hetero INTRON
SBS Chr4 30321616 G-T Homo INTERGENIC
SBS Chr4 31296256 C-T Homo INTERGENIC
SBS Chr5 3418189 T-G Homo NON_SYNONYMOUS_CODING OsKitaake05g041200
SBS Chr5 14935260 T-G Homo INTERGENIC
SBS Chr6 8896820 G-T Hetero INTERGENIC
SBS Chr6 29591289 G-A Homo INTERGENIC
SBS Chr7 915290 G-C Hetero INTERGENIC
SBS Chr8 14526168 G-A Hetero INTERGENIC
SBS Chr9 8997648 C-T Homo SYNONYMOUS_CODING
SBS Chr9 22368613 G-A Hetero INTRON
SBS Chr10 7782087 C-T Homo INTERGENIC
SBS Chr10 23024741 T-C Hetero INTERGENIC
SBS Chr11 7767631 G-A Homo INTRON
SBS Chr11 9074051 G-T Homo UTR_5_PRIME
SBS Chr11 9074052 G-T Homo UTR_5_PRIME
SBS Chr11 23442486 A-T Hetero INTERGENIC
SBS Chr12 4104211 C-T Hetero INTERGENIC
SBS Chr12 11837310 G-C Hetero INTERGENIC
SBS Chr12 11905206 G-A Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 2998159 2998166 7 OsKitaake11g042300
Deletion Chr11 5228093 5228097 4
Deletion Chr12 5357017 5357022 5
Deletion Chr9 7997097 7997098 1
Deletion Chr11 8448524 8448527 3
Deletion Chr5 8550916 8550917 1
Deletion Chr11 8802373 8802377 4
Deletion Chr10 9861167 9861169 2
Deletion Chr9 13162839 13162844 5
Deletion Chr10 13714640 13714647 7
Deletion Chr3 21462150 21462152 2
Deletion Chr5 22916508 22916509 1
Deletion Chr2 32344563 32344565 2
Deletion Chr4 34380612 34380614 2
Deletion Chr1 43254124 43254125 1

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 38357882 38357886 3
Insertion Chr6 16801760 16801763 2
Insertion Chr9 15818001 15818004 2
Insertion Chr12 19120522 19120525 2
Insertion Chr12 20146354 20146356 1 OsKitaake12g154800

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 31512273 32466332 OsKitaake04g260000
Inversion Chr4 31512296 32466335 OsKitaake04g260000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1961094	C-A	Hetero	INTERGENIC
SBS	Chr1	14909856	T-C	Homo	INTERGENIC
SBS	Chr1	33760567	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g346600
SBS	Chr1	41549960	C-A	Hetero	INTRON
SBS	Chr2	8917861	C-T	Hetero	INTERGENIC
SBS	Chr2	29997897	T-A	Hetero	INTERGENIC
SBS	Chr2	33155664	G-A	Hetero	UTR_5_PRIME
SBS	Chr3	17740362	G-A	Hetero	INTERGENIC
SBS	Chr3	19829400	A-T	Hetero	INTERGENIC
SBS	Chr3	23145817	G-A	Hetero	INTERGENIC
SBS	Chr4	12029226	G-T	Hetero	INTERGENIC
SBS	Chr4	12764198	G-T	Homo	INTRON
SBS	Chr4	18491248	G-T	Hetero	INTERGENIC
SBS	Chr4	18491249	G-T	Hetero	INTERGENIC
SBS	Chr4	20126377	C-T	Hetero	INTRON
SBS	Chr4	30321616	G-T	Homo	INTERGENIC
SBS	Chr4	31296256	C-T	Homo	INTERGENIC
SBS	Chr5	3418189	T-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g041200
SBS	Chr5	14935260	T-G	Homo	INTERGENIC
SBS	Chr6	8896820	G-T	Hetero	INTERGENIC
SBS	Chr6	29591289	G-A	Homo	INTERGENIC
SBS	Chr7	915290	G-C	Hetero	INTERGENIC
SBS	Chr8	14526168	G-A	Hetero	INTERGENIC
SBS	Chr9	8997648	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr9	22368613	G-A	Hetero	INTRON
SBS	Chr10	7782087	C-T	Homo	INTERGENIC
SBS	Chr10	23024741	T-C	Hetero	INTERGENIC
SBS	Chr11	7767631	G-A	Homo	INTRON
SBS	Chr11	9074051	G-T	Homo	UTR_5_PRIME
SBS	Chr11	9074052	G-T	Homo	UTR_5_PRIME
SBS	Chr11	23442486	A-T	Hetero	INTERGENIC
SBS	Chr12	4104211	C-T	Hetero	INTERGENIC
SBS	Chr12	11837310	G-C	Hetero	INTERGENIC
SBS	Chr12	11905206	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	2998159	2998166	7	OsKitaake11g042300
Deletion	Chr11	5228093	5228097	4
Deletion	Chr12	5357017	5357022	5
Deletion	Chr9	7997097	7997098	1
Deletion	Chr11	8448524	8448527	3
Deletion	Chr5	8550916	8550917	1
Deletion	Chr11	8802373	8802377	4
Deletion	Chr10	9861167	9861169	2
Deletion	Chr9	13162839	13162844	5
Deletion	Chr10	13714640	13714647	7
Deletion	Chr3	21462150	21462152	2
Deletion	Chr5	22916508	22916509	1
Deletion	Chr2	32344563	32344565	2
Deletion	Chr4	34380612	34380614	2
Deletion	Chr1	43254124	43254125	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	31512273	32466332	OsKitaake04g260000
Inversion	Chr4	31512296	32466335	OsKitaake04g260000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes