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Mutant Information

Mutant Name	FN2124-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2124-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 50

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 14923241 C-A Homo INTERGENIC
SBS Chr1 27849801 G-C Homo INTERGENIC
SBS Chr1 33198855 C-T Hetero INTERGENIC
SBS Chr1 43308461 A-G Hetero INTERGENIC
SBS Chr1 43325336 A-G Hetero INTRON
SBS Chr2 24323688 G-A Hetero INTRON
SBS Chr3 1503036 C-T Homo INTERGENIC
SBS Chr3 1503037 C-T Homo INTERGENIC
SBS Chr3 17626629 C-T Hetero INTERGENIC
SBS Chr3 33362755 C-T Homo UTR_3_PRIME
SBS Chr3 34506712 T-A Homo INTERGENIC
SBS Chr4 590517 G-C Homo INTERGENIC
SBS Chr4 1114236 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g008800
SBS Chr4 1144859 G-T Hetero INTRON
SBS Chr4 17826225 C-A Hetero INTERGENIC
SBS Chr4 18665994 C-T Hetero INTERGENIC
SBS Chr4 27135503 C-T Hetero INTERGENIC
SBS Chr4 34745067 T-C Hetero INTERGENIC
SBS Chr5 4619696 C-G Homo INTERGENIC
SBS Chr5 5059844 C-T Homo INTERGENIC
SBS Chr6 1510759 A-T Hetero INTERGENIC
SBS Chr6 3463141 A-G Homo INTERGENIC
SBS Chr6 7525918 C-T Homo UTR_3_PRIME
SBS Chr6 16107709 C-T Hetero INTERGENIC
SBS Chr6 23778787 C-T Homo SYNONYMOUS_CODING
SBS Chr6 24394636 C-T Hetero INTERGENIC
SBS Chr7 22241558 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g187600
SBS Chr7 22612321 G-A Hetero INTERGENIC
SBS Chr7 28154045 G-A Homo INTERGENIC
SBS Chr8 2523585 T-A Hetero INTERGENIC
SBS Chr8 6341739 T-A Hetero INTRON
SBS Chr8 7738229 T-C Homo INTERGENIC
SBS Chr8 7951517 C-T Hetero INTERGENIC
SBS Chr8 11199272 G-C Hetero INTERGENIC
SBS Chr8 13673796 A-T Homo INTERGENIC
SBS Chr8 17277839 G-A Hetero INTERGENIC
SBS Chr9 9828250 T-A Hetero INTERGENIC
SBS Chr9 11833729 G-A Hetero INTERGENIC
SBS Chr10 1620496 C-G Hetero INTERGENIC
SBS Chr10 1963501 G-A Hetero INTERGENIC
SBS Chr10 15975131 C-T Hetero INTERGENIC
SBS Chr11 14048017 T-C Hetero UTR_3_PRIME
SBS Chr11 18901165 C-G Homo INTERGENIC
SBS Chr12 9620224 G-T Hetero INTERGENIC
SBS Chr12 10318550 T-C Hetero INTERGENIC
SBS Chr12 12841712 G-A Hetero INTERGENIC
SBS Chr12 13250751 A-G Hetero INTERGENIC
SBS Chr12 14270403 A-G Hetero INTERGENIC
SBS Chr12 24972095 A-G Hetero INTRON
SBS Chr12 26821854 T-C Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 1231205 1231206 1
Deletion Chr11 2381001 2442000 60999 12
Deletion Chr6 3450824 3450831 7
Deletion Chr9 5060844 5060845 1 OsKitaake09g029500
Deletion Chr6 16554110 16554113 3
Deletion Chr10 16751753 16751767 14
Deletion Chr10 17550504 17550506 2
Deletion Chr7 21519650 21519651 1
Deletion Chr5 25716061 25716073 12
Deletion Chr5 26859001 26944000 84999 10
Deletion Chr8 27877171 27877172 1
Deletion Chr3 29477293 29477295 2
Deletion Chr3 34958184 34958185 1
Deletion Chr1 43274869 43274872 3

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 7820961 7820964 2
Insertion Chr7 8251469 8251472 2
Insertion Chr7 24265846 24265849 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 6258471 6971905

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14923241	C-A	Homo	INTERGENIC
SBS	Chr1	27849801	G-C	Homo	INTERGENIC
SBS	Chr1	33198855	C-T	Hetero	INTERGENIC
SBS	Chr1	43308461	A-G	Hetero	INTERGENIC
SBS	Chr1	43325336	A-G	Hetero	INTRON
SBS	Chr2	24323688	G-A	Hetero	INTRON
SBS	Chr3	1503036	C-T	Homo	INTERGENIC
SBS	Chr3	1503037	C-T	Homo	INTERGENIC
SBS	Chr3	17626629	C-T	Hetero	INTERGENIC
SBS	Chr3	33362755	C-T	Homo	UTR_3_PRIME
SBS	Chr3	34506712	T-A	Homo	INTERGENIC
SBS	Chr4	590517	G-C	Homo	INTERGENIC
SBS	Chr4	1114236	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g008800
SBS	Chr4	1144859	G-T	Hetero	INTRON
SBS	Chr4	17826225	C-A	Hetero	INTERGENIC
SBS	Chr4	18665994	C-T	Hetero	INTERGENIC
SBS	Chr4	27135503	C-T	Hetero	INTERGENIC
SBS	Chr4	34745067	T-C	Hetero	INTERGENIC
SBS	Chr5	4619696	C-G	Homo	INTERGENIC
SBS	Chr5	5059844	C-T	Homo	INTERGENIC
SBS	Chr6	1510759	A-T	Hetero	INTERGENIC
SBS	Chr6	3463141	A-G	Homo	INTERGENIC
SBS	Chr6	7525918	C-T	Homo	UTR_3_PRIME
SBS	Chr6	16107709	C-T	Hetero	INTERGENIC
SBS	Chr6	23778787	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr6	24394636	C-T	Hetero	INTERGENIC
SBS	Chr7	22241558	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g187600
SBS	Chr7	22612321	G-A	Hetero	INTERGENIC
SBS	Chr7	28154045	G-A	Homo	INTERGENIC
SBS	Chr8	2523585	T-A	Hetero	INTERGENIC
SBS	Chr8	6341739	T-A	Hetero	INTRON
SBS	Chr8	7738229	T-C	Homo	INTERGENIC
SBS	Chr8	7951517	C-T	Hetero	INTERGENIC
SBS	Chr8	11199272	G-C	Hetero	INTERGENIC
SBS	Chr8	13673796	A-T	Homo	INTERGENIC
SBS	Chr8	17277839	G-A	Hetero	INTERGENIC
SBS	Chr9	9828250	T-A	Hetero	INTERGENIC
SBS	Chr9	11833729	G-A	Hetero	INTERGENIC
SBS	Chr10	1620496	C-G	Hetero	INTERGENIC
SBS	Chr10	1963501	G-A	Hetero	INTERGENIC
SBS	Chr10	15975131	C-T	Hetero	INTERGENIC
SBS	Chr11	14048017	T-C	Hetero	UTR_3_PRIME
SBS	Chr11	18901165	C-G	Homo	INTERGENIC
SBS	Chr12	9620224	G-T	Hetero	INTERGENIC
SBS	Chr12	10318550	T-C	Hetero	INTERGENIC
SBS	Chr12	12841712	G-A	Hetero	INTERGENIC
SBS	Chr12	13250751	A-G	Hetero	INTERGENIC
SBS	Chr12	14270403	A-G	Hetero	INTERGENIC
SBS	Chr12	24972095	A-G	Hetero	INTRON
SBS	Chr12	26821854	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	1231205	1231206	1
Deletion	Chr11	2381001	2442000	60999	12
Deletion	Chr6	3450824	3450831	7
Deletion	Chr9	5060844	5060845	1	OsKitaake09g029500
Deletion	Chr6	16554110	16554113	3
Deletion	Chr10	16751753	16751767	14
Deletion	Chr10	17550504	17550506	2
Deletion	Chr7	21519650	21519651	1
Deletion	Chr5	25716061	25716073	12
Deletion	Chr5	26859001	26944000	84999	10
Deletion	Chr8	27877171	27877172	1
Deletion	Chr3	29477293	29477295	2
Deletion	Chr3	34958184	34958185	1
Deletion	Chr1	43274869	43274872	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	6258471	6971905

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes