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Mutant Information

Mutant Name	FN2126-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2126-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7543050 G-T Homo INTRON
SBS Chr1 14504298 T-A Hetero INTERGENIC
SBS Chr1 15577780 C-G Hetero INTERGENIC
SBS Chr1 22342392 T-A Hetero INTERGENIC
SBS Chr1 24935853 C-T Homo INTERGENIC
SBS Chr1 27945045 T-A Hetero INTERGENIC
SBS Chr1 28651015 G-A Hetero INTERGENIC
SBS Chr1 35059937 T-A Hetero INTERGENIC
SBS Chr2 1706903 C-A Hetero INTRON
SBS Chr2 20888927 C-G Hetero INTERGENIC
SBS Chr3 16925977 C-T Hetero INTERGENIC
SBS Chr3 21710240 G-A Hetero INTERGENIC
SBS Chr3 31305442 C-T Homo INTRON
SBS Chr4 300149 C-T Hetero INTERGENIC
SBS Chr4 1884996 A-T Hetero INTERGENIC
SBS Chr5 1763700 G-A Hetero INTERGENIC
SBS Chr5 3246377 C-A Hetero INTERGENIC
SBS Chr5 5323167 C-T Hetero INTERGENIC
SBS Chr5 5932741 C-A Hetero INTERGENIC
SBS Chr5 12814724 G-A Homo INTERGENIC
SBS Chr5 23153307 A-T Homo INTERGENIC
SBS Chr5 26026961 A-G Hetero INTERGENIC
SBS Chr6 4162509 A-G Homo INTRON
SBS Chr6 27507941 C-T Hetero INTRON
SBS Chr7 12158364 C-T Homo INTERGENIC
SBS Chr8 2107419 A-G Hetero INTERGENIC
SBS Chr8 7408230 T-C Homo INTERGENIC
SBS Chr8 12146248 G-A Hetero INTERGENIC
SBS Chr8 21561924 G-A Hetero UTR_3_PRIME
SBS Chr8 24325556 A-T Hetero INTERGENIC
SBS Chr8 25667308 A-T Hetero INTERGENIC
SBS Chr8 26689943 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g215201
SBS Chr9 3907507 C-T Homo INTERGENIC
SBS Chr9 11116182 A-T Hetero INTERGENIC
SBS Chr9 11585784 C-T Hetero INTERGENIC
SBS Chr9 19792660 A-G Homo INTERGENIC
SBS Chr10 16163754 A-T Hetero INTRON
SBS Chr11 445671 T-A Hetero INTERGENIC
SBS Chr11 26450889 A-C Hetero INTRON
SBS Chr11 28058961 G-A Hetero INTERGENIC
SBS Chr12 918721 C-A Homo NON_SYNONYMOUS_CODING OsKitaake12g013300
SBS Chr12 8694424 C-A Hetero INTERGENIC
SBS Chr12 17286503 A-G Homo INTRON

Deletions: 23

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 128027 128029 2
Deletion Chr11 225001 246000 20999 3
Deletion Chr7 456183 456184 1
Deletion Chr2 1635597 1635599 2
Deletion Chr5 1697620 1697622 2
Deletion Chr12 2866004 2866013 9 OsKitaake12g042800
Deletion Chr7 3224766 3224771 5
Deletion Chr5 3943001 4014000 70999 12
Deletion Chr5 4017001 4061000 43999 5
Deletion Chr8 5045662 5045682 20
Deletion Chr10 8931001 8976000 44999
Deletion Chr11 10233822 10233838 16
Deletion Chr1 14367121 14367124 3
Deletion Chr11 15695419 15695420 1
Deletion Chr5 15830860 15830862 2
Deletion Chr5 17466302 17466304 2
Deletion Chr11 18908179 18908181 2
Deletion Chr4 23626820 23626821 1
Deletion Chr7 26339123 26339124 1 OsKitaake07g242400
Deletion Chr11 28256716 28256723 7
Deletion Chr5 30173110 30173118 8
Deletion Chr3 35171838 35171839 1 OsKitaake03g385100
Deletion Chr1 37693220 37693221 1

Insertions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 20981909 20981912 2
Insertion Chr3 25967012 25967018 5
Insertion Chr3 33634317 33634320 2
Insertion Chr5 3661025 3661028 2
Insertion Chr6 6119391 6119394 2
Insertion Chr6 7890827 7890830 2
Insertion Chr7 3185791 3185794 2
Insertion Chr8 28306535 28306538 2
Insertion Chr10 21013292 21013295 2
Insertion Chr10 22740920 22740923 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 226142 Chr2 29067741 OsKitaake11g001500
Translocation Chr11 246097 Chr2 29067027
Translocation Chr7 15101347 Chr3 34659365
Translocation Chr7 15102188 Chr3 35026736

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7543050	G-T	Homo	INTRON
SBS	Chr1	14504298	T-A	Hetero	INTERGENIC
SBS	Chr1	15577780	C-G	Hetero	INTERGENIC
SBS	Chr1	22342392	T-A	Hetero	INTERGENIC
SBS	Chr1	24935853	C-T	Homo	INTERGENIC
SBS	Chr1	27945045	T-A	Hetero	INTERGENIC
SBS	Chr1	28651015	G-A	Hetero	INTERGENIC
SBS	Chr1	35059937	T-A	Hetero	INTERGENIC
SBS	Chr2	1706903	C-A	Hetero	INTRON
SBS	Chr2	20888927	C-G	Hetero	INTERGENIC
SBS	Chr3	16925977	C-T	Hetero	INTERGENIC
SBS	Chr3	21710240	G-A	Hetero	INTERGENIC
SBS	Chr3	31305442	C-T	Homo	INTRON
SBS	Chr4	300149	C-T	Hetero	INTERGENIC
SBS	Chr4	1884996	A-T	Hetero	INTERGENIC
SBS	Chr5	1763700	G-A	Hetero	INTERGENIC
SBS	Chr5	3246377	C-A	Hetero	INTERGENIC
SBS	Chr5	5323167	C-T	Hetero	INTERGENIC
SBS	Chr5	5932741	C-A	Hetero	INTERGENIC
SBS	Chr5	12814724	G-A	Homo	INTERGENIC
SBS	Chr5	23153307	A-T	Homo	INTERGENIC
SBS	Chr5	26026961	A-G	Hetero	INTERGENIC
SBS	Chr6	4162509	A-G	Homo	INTRON
SBS	Chr6	27507941	C-T	Hetero	INTRON
SBS	Chr7	12158364	C-T	Homo	INTERGENIC
SBS	Chr8	2107419	A-G	Hetero	INTERGENIC
SBS	Chr8	7408230	T-C	Homo	INTERGENIC
SBS	Chr8	12146248	G-A	Hetero	INTERGENIC
SBS	Chr8	21561924	G-A	Hetero	UTR_3_PRIME
SBS	Chr8	24325556	A-T	Hetero	INTERGENIC
SBS	Chr8	25667308	A-T	Hetero	INTERGENIC
SBS	Chr8	26689943	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g215201
SBS	Chr9	3907507	C-T	Homo	INTERGENIC
SBS	Chr9	11116182	A-T	Hetero	INTERGENIC
SBS	Chr9	11585784	C-T	Hetero	INTERGENIC
SBS	Chr9	19792660	A-G	Homo	INTERGENIC
SBS	Chr10	16163754	A-T	Hetero	INTRON
SBS	Chr11	445671	T-A	Hetero	INTERGENIC
SBS	Chr11	26450889	A-C	Hetero	INTRON
SBS	Chr11	28058961	G-A	Hetero	INTERGENIC
SBS	Chr12	918721	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g013300
SBS	Chr12	8694424	C-A	Hetero	INTERGENIC
SBS	Chr12	17286503	A-G	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	128027	128029	2
Deletion	Chr11	225001	246000	20999	3
Deletion	Chr7	456183	456184	1
Deletion	Chr2	1635597	1635599	2
Deletion	Chr5	1697620	1697622	2
Deletion	Chr12	2866004	2866013	9	OsKitaake12g042800
Deletion	Chr7	3224766	3224771	5
Deletion	Chr5	3943001	4014000	70999	12
Deletion	Chr5	4017001	4061000	43999	5
Deletion	Chr8	5045662	5045682	20
Deletion	Chr10	8931001	8976000	44999
Deletion	Chr11	10233822	10233838	16
Deletion	Chr1	14367121	14367124	3
Deletion	Chr11	15695419	15695420	1
Deletion	Chr5	15830860	15830862	2
Deletion	Chr5	17466302	17466304	2
Deletion	Chr11	18908179	18908181	2
Deletion	Chr4	23626820	23626821	1
Deletion	Chr7	26339123	26339124	1	OsKitaake07g242400
Deletion	Chr11	28256716	28256723	7
Deletion	Chr5	30173110	30173118	8
Deletion	Chr3	35171838	35171839	1	OsKitaake03g385100
Deletion	Chr1	37693220	37693221	1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	226142	Chr2	29067741	OsKitaake11g001500
Translocation	Chr11	246097	Chr2	29067027
Translocation	Chr7	15101347	Chr3	34659365
Translocation	Chr7	15102188	Chr3	35026736

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes