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| Mutant Information |
|---|
| Mutant Name | FN2128-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2128-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
|
| Variant Information |
|---|
Single base substitutions: 40
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 2077433 | G-T | Hetero | UTR_5_PRIME | |
| SBS | Chr1 | 6146113 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 17797357 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 34715768 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 5008392 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 7127504 | G-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr3 | 16646877 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 21992077 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 22594437 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 22594439 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 28168586 | A-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 33149817 | C-A | Homo | INTERGENIC | |
| SBS | Chr4 | 5915029 | G-C | Homo | INTERGENIC | |
| SBS | Chr4 | 11595472 | C-A | Homo | INTERGENIC | |
| SBS | Chr4 | 24163616 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 29478273 | A-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake04g225800 |
| SBS | Chr5 | 17937322 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 19699812 | T-C | Homo | INTERGENIC | |
| SBS | Chr5 | 23466246 | G-T | Homo | INTERGENIC | |
| SBS | Chr6 | 11062976 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 16851299 | G-A | Hetero | UTR_5_PRIME | |
| SBS | Chr7 | 1275524 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 1275525 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 707502 | C-A | Homo | UTR_3_PRIME | |
| SBS | Chr8 | 5366984 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 10200689 | T-A | Homo | INTERGENIC | |
| SBS | Chr9 | 12796654 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 21147851 | T-C | Homo | INTRON | |
| SBS | Chr10 | 852218 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 10994586 | C-T | Hetero | INTRON | |
| SBS | Chr10 | 13640962 | C-A | Hetero | INTRON | |
| SBS | Chr11 | 15476932 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 18274994 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 27404626 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 7267162 | T-C | Hetero | INTRON | |
| SBS | Chr12 | 8580225 | G-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 10236059 | C-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 10611832 | G-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 19289099 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 19455563 | C-T | Hetero | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 7681598 | 7681708 | 110 | |
| Deletion | Chr4 | 8445099 | 8445100 | 1 | |
| Deletion | Chr9 | 9702735 | 9702737 | 2 | |
| Deletion | Chr2 | 14727001 | 15222000 | 494999 | 15 |
| Deletion | Chr2 | 15272536 | 15272537 | 1 | |
| Deletion | Chr7 | 18477635 | 18477653 | 18 | |
| Deletion | Chr7 | 21123232 | 21123249 | 17 | OsKitaake07g174700 |
| Deletion | Chr4 | 21288453 | 21288456 | 3 | |
| Deletion | Chr7 | 22552001 | 22617000 | 64999 | 13 |
| Deletion | Chr10 | 23561509 | 23561514 | 5 | OsKitaake10g201400 |
| Deletion | Chr5 | 25001216 | 25001225 | 9 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 6957702 | 6957705 | 2 | |
| Insertion | Chr2 | 22879930 | 22879933 | 2 | |
| Insertion | Chr5 | 7007137 | 7007140 | 2 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr7 | 1653132 | 1714816 | OsKitaake07g022900 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr7 | 16436815 | Chr2 | 14898606 |