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Mutant Information

Mutant Name	FN2136-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2136-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 51

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 413397 T-A Homo INTERGENIC
SBS Chr1 4144884 C-T Hetero INTRON
SBS Chr1 12059287 G-A Hetero INTERGENIC
SBS Chr1 13151178 G-C Hetero INTERGENIC
SBS Chr1 15352309 C-G Homo INTERGENIC
SBS Chr1 19244809 T-A Hetero INTERGENIC
SBS Chr1 27934282 G-A Homo UTR_3_PRIME
SBS Chr1 31452149 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g315500
SBS Chr1 31476597 C-T Hetero INTERGENIC
SBS Chr1 39422515 A-G Hetero UTR_3_PRIME
SBS Chr1 41031624 T-C Hetero INTRON
SBS Chr2 15278794 C-A Hetero INTRON
SBS Chr2 16812420 C-A Hetero INTERGENIC
SBS Chr2 20592699 T-C Hetero INTERGENIC
SBS Chr2 23125558 C-T Hetero INTERGENIC
SBS Chr2 28806519 G-A Hetero INTERGENIC
SBS Chr2 35192855 T-C Hetero INTERGENIC
SBS Chr3 15553228 G-A Hetero INTERGENIC
SBS Chr3 33874120 T-C Homo SYNONYMOUS_CODING
SBS Chr3 36324552 T-C Homo INTERGENIC
SBS Chr4 10946403 C-G Homo INTERGENIC
SBS Chr4 12607904 C-T Hetero INTERGENIC
SBS Chr5 8358830 C-T Hetero INTERGENIC
SBS Chr5 23895441 C-T Hetero INTERGENIC
SBS Chr6 2320916 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake06g030200
SBS Chr6 9925638 T-C Hetero INTERGENIC
SBS Chr6 12138710 G-A Hetero UTR_3_PRIME
SBS Chr6 15678993 A-T Hetero INTERGENIC
SBS Chr6 22277622 G-A Hetero INTERGENIC
SBS Chr7 7489341 A-G Hetero INTERGENIC
SBS Chr7 18859329 G-C Hetero INTERGENIC
SBS Chr8 4873143 C-G Hetero INTERGENIC
SBS Chr8 9888119 A-T Hetero INTERGENIC
SBS Chr8 14913699 T-C Hetero INTRON
SBS Chr8 15932274 G-A Hetero INTRON
SBS Chr8 26225284 C-A Hetero INTERGENIC
SBS Chr9 15235068 C-G Hetero INTERGENIC
SBS Chr9 16373156 A-G Hetero INTERGENIC
SBS Chr10 7580306 G-A Hetero INTERGENIC
SBS Chr10 10075876 G-A Hetero INTERGENIC
SBS Chr10 11883024 A-G Hetero INTRON
SBS Chr10 14637742 A-T Homo INTERGENIC
SBS Chr11 3938424 T-C Homo INTERGENIC
SBS Chr11 27578825 C-T Hetero INTERGENIC
SBS Chr12 7729650 C-T Hetero INTERGENIC
SBS Chr12 7890051 T-C Hetero INTERGENIC
SBS Chr12 8583100 T-C Hetero INTERGENIC
SBS Chr12 9538586 C-T Hetero INTERGENIC
SBS Chr12 9538593 C-G Hetero INTERGENIC
SBS Chr12 13950140 A-G Hetero INTERGENIC
SBS Chr12 26318361 C-T Hetero INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 345573 345574 1
Deletion Chr8 4370173 4370174 1
Deletion Chr2 7350711 7350718 7
Deletion Chr11 8185186 8185190 4
Deletion Chr12 9581146 9581147 1
Deletion Chr4 11379840 11379852 12
Deletion Chr8 11568750 11568752 2
Deletion Chr4 12460712 12460730 18
Deletion Chr2 19028062 19028063 1
Deletion Chr12 20478971 20478972 1
Deletion Chr5 20842911 20842915 4
Deletion Chr5 21558985 21558991 6
Deletion Chr6 22829679 22829685 6
Deletion Chr5 23852125 23852127 2
Deletion Chr11 25538777 25538787 10
Deletion Chr8 26231001 26241000 9999 3
Deletion Chr8 26679001 26724000 44999 8
Deletion Chr5 27608998 27608999 1 OsKitaake05g251900

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 12464015 12464017 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 10051849 10082857
Inversion Chr8 26670723 26679612 OsKitaake08g215100
Inversion Chr1 31507654 32061996
Inversion Chr1 31507655 32061999

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 10075810 Chr2 8057324 OsKitaake02g103400
Translocation Chr10 10082842 Chr2 8057315 OsKitaake02g103400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	413397	T-A	Homo	INTERGENIC
SBS	Chr1	4144884	C-T	Hetero	INTRON
SBS	Chr1	12059287	G-A	Hetero	INTERGENIC
SBS	Chr1	13151178	G-C	Hetero	INTERGENIC
SBS	Chr1	15352309	C-G	Homo	INTERGENIC
SBS	Chr1	19244809	T-A	Hetero	INTERGENIC
SBS	Chr1	27934282	G-A	Homo	UTR_3_PRIME
SBS	Chr1	31452149	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g315500
SBS	Chr1	31476597	C-T	Hetero	INTERGENIC
SBS	Chr1	39422515	A-G	Hetero	UTR_3_PRIME
SBS	Chr1	41031624	T-C	Hetero	INTRON
SBS	Chr2	15278794	C-A	Hetero	INTRON
SBS	Chr2	16812420	C-A	Hetero	INTERGENIC
SBS	Chr2	20592699	T-C	Hetero	INTERGENIC
SBS	Chr2	23125558	C-T	Hetero	INTERGENIC
SBS	Chr2	28806519	G-A	Hetero	INTERGENIC
SBS	Chr2	35192855	T-C	Hetero	INTERGENIC
SBS	Chr3	15553228	G-A	Hetero	INTERGENIC
SBS	Chr3	33874120	T-C	Homo	SYNONYMOUS_CODING
SBS	Chr3	36324552	T-C	Homo	INTERGENIC
SBS	Chr4	10946403	C-G	Homo	INTERGENIC
SBS	Chr4	12607904	C-T	Hetero	INTERGENIC
SBS	Chr5	8358830	C-T	Hetero	INTERGENIC
SBS	Chr5	23895441	C-T	Hetero	INTERGENIC
SBS	Chr6	2320916	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g030200
SBS	Chr6	9925638	T-C	Hetero	INTERGENIC
SBS	Chr6	12138710	G-A	Hetero	UTR_3_PRIME
SBS	Chr6	15678993	A-T	Hetero	INTERGENIC
SBS	Chr6	22277622	G-A	Hetero	INTERGENIC
SBS	Chr7	7489341	A-G	Hetero	INTERGENIC
SBS	Chr7	18859329	G-C	Hetero	INTERGENIC
SBS	Chr8	4873143	C-G	Hetero	INTERGENIC
SBS	Chr8	9888119	A-T	Hetero	INTERGENIC
SBS	Chr8	14913699	T-C	Hetero	INTRON
SBS	Chr8	15932274	G-A	Hetero	INTRON
SBS	Chr8	26225284	C-A	Hetero	INTERGENIC
SBS	Chr9	15235068	C-G	Hetero	INTERGENIC
SBS	Chr9	16373156	A-G	Hetero	INTERGENIC
SBS	Chr10	7580306	G-A	Hetero	INTERGENIC
SBS	Chr10	10075876	G-A	Hetero	INTERGENIC
SBS	Chr10	11883024	A-G	Hetero	INTRON
SBS	Chr10	14637742	A-T	Homo	INTERGENIC
SBS	Chr11	3938424	T-C	Homo	INTERGENIC
SBS	Chr11	27578825	C-T	Hetero	INTERGENIC
SBS	Chr12	7729650	C-T	Hetero	INTERGENIC
SBS	Chr12	7890051	T-C	Hetero	INTERGENIC
SBS	Chr12	8583100	T-C	Hetero	INTERGENIC
SBS	Chr12	9538586	C-T	Hetero	INTERGENIC
SBS	Chr12	9538593	C-G	Hetero	INTERGENIC
SBS	Chr12	13950140	A-G	Hetero	INTERGENIC
SBS	Chr12	26318361	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	345573	345574	1
Deletion	Chr8	4370173	4370174	1
Deletion	Chr2	7350711	7350718	7
Deletion	Chr11	8185186	8185190	4
Deletion	Chr12	9581146	9581147	1
Deletion	Chr4	11379840	11379852	12
Deletion	Chr8	11568750	11568752	2
Deletion	Chr4	12460712	12460730	18
Deletion	Chr2	19028062	19028063	1
Deletion	Chr12	20478971	20478972	1
Deletion	Chr5	20842911	20842915	4
Deletion	Chr5	21558985	21558991	6
Deletion	Chr6	22829679	22829685	6
Deletion	Chr5	23852125	23852127	2
Deletion	Chr11	25538777	25538787	10
Deletion	Chr8	26231001	26241000	9999	3
Deletion	Chr8	26679001	26724000	44999	8
Deletion	Chr5	27608998	27608999	1	OsKitaake05g251900

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	10051849	10082857
Inversion	Chr8	26670723	26679612	OsKitaake08g215100
Inversion	Chr1	31507654	32061996
Inversion	Chr1	31507655	32061999

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes