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| Mutant Information |
|---|
| Mutant Name | FN2137-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2137-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
|
| Variant Information |
|---|
Single base substitutions: 32
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 6459070 | A-T | Hetero | INTRON | |
| SBS | Chr1 | 14309275 | G-A | Hetero | INTRON | |
| SBS | Chr2 | 9205480 | T-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 12876802 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 30358636 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 1129083 | C-A | Homo | INTERGENIC | |
| SBS | Chr4 | 5603171 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 11916424 | A-T | Homo | INTERGENIC | |
| SBS | Chr4 | 21217271 | C-A | Homo | INTERGENIC | |
| SBS | Chr4 | 21314444 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 22611691 | C-T | Homo | UTR_3_PRIME | |
| SBS | Chr5 | 8234865 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 13031808 | T-C | Homo | INTERGENIC | |
| SBS | Chr5 | 19937379 | C-A | Homo | INTERGENIC | |
| SBS | Chr6 | 7354178 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 10545465 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 604808 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 8910848 | G-T | Homo | INTERGENIC | |
| SBS | Chr9 | 12220676 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake09g079800 |
| SBS | Chr9 | 16487154 | A-G | Hetero | UTR_3_PRIME | |
| SBS | Chr10 | 7086184 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 16471332 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 2598012 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 16961891 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 26247582 | A-G | Homo | INTERGENIC | |
| SBS | Chr12 | 5041591 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 7787989 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 11117063 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 12149730 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 13518637 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 17393705 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 21291037 | C-T | Hetero | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 9305456 | 9305457 | 1 | |
| Deletion | Chr12 | 9611428 | 9611429 | 1 | |
| Deletion | Chr8 | 9711945 | 9711946 | 1 | |
| Deletion | Chr2 | 9792112 | 9792113 | 1 | |
| Deletion | Chr2 | 12820599 | 12820600 | 1 | OsKitaake02g143500 |
| Deletion | Chr1 | 14160082 | 14160086 | 4 | |
| Deletion | Chr11 | 22085866 | 22085867 | 1 | |
| Deletion | Chr1 | 28024100 | 28024125 | 25 | |
| Deletion | Chr4 | 31808393 | 31808399 | 6 | |
| Deletion | Chr3 | 32183463 | 32183475 | 12 | |
| Deletion | Chr3 | 37288927 | 37288931 | 4 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr7 | 17400373 | 17400376 | 2 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 7222023 | Chr1 | 8251209 | |
| Translocation | Chr12 | 7222551 | Chr1 | 8251174 |