Search Kitaake

Mutant Information

Mutant Name	FN2141-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2141-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Normal (Between 75% and 125%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Low (Between 25% and 74%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5359677 G-A Hetero INTERGENIC
SBS Chr1 5646194 A-G Hetero INTERGENIC
SBS Chr1 9732755 C-T Hetero INTERGENIC
SBS Chr1 11602652 C-G Hetero INTERGENIC
SBS Chr1 14690386 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g166200
SBS Chr1 20243777 C-T Hetero INTERGENIC
SBS Chr1 33088496 G-A Hetero INTERGENIC
SBS Chr1 41896801 A-T Homo UTR_3_PRIME
SBS Chr1 41896802 A-T Homo UTR_3_PRIME
SBS Chr1 44249342 C-T Hetero INTERGENIC
SBS Chr2 5523208 G-A Hetero INTERGENIC
SBS Chr2 19259076 C-A Hetero INTRON
SBS Chr2 27022244 T-G Homo INTERGENIC
SBS Chr3 26569121 G-T Homo INTERGENIC
SBS Chr3 32436942 G-C Hetero INTERGENIC
SBS Chr4 9155572 C-T Homo INTERGENIC
SBS Chr4 11238121 C-T Homo INTERGENIC
SBS Chr4 13617304 C-T Hetero INTERGENIC
SBS Chr4 15965123 T-C Hetero INTERGENIC
SBS Chr4 17172413 T-C Homo INTERGENIC
SBS Chr4 24852057 G-T Homo INTERGENIC
SBS Chr5 8165566 G-C Homo INTERGENIC
SBS Chr5 17514167 C-T Homo INTERGENIC
SBS Chr5 20203588 C-G Hetero INTERGENIC
SBS Chr5 20610459 G-A Hetero INTERGENIC
SBS Chr5 30037158 G-T Hetero INTERGENIC
SBS Chr5 30037160 C-T Hetero INTERGENIC
SBS Chr6 10756172 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake06g120501
SBS Chr6 11491284 A-T Hetero INTRON
SBS Chr6 11948097 G-C Hetero UTR_3_PRIME
SBS Chr6 22122460 G-T Hetero INTERGENIC
SBS Chr7 5432292 A-G Homo INTRON
SBS Chr7 14123854 G-T Homo INTERGENIC
SBS Chr7 18924593 T-C Hetero INTERGENIC
SBS Chr7 19037345 C-T Hetero INTERGENIC
SBS Chr8 24153185 A-C Homo INTERGENIC
SBS Chr10 16162500 C-G Homo NON_SYNONYMOUS_CODING OsKitaake10g108300
SBS Chr10 18407694 T-A Homo INTERGENIC
SBS Chr10 19009716 A-T Homo INTERGENIC
SBS Chr10 22475654 G-A Hetero INTERGENIC
SBS Chr11 28604969 G-T Hetero INTRON
SBS Chr12 1715775 A-T Hetero INTRON

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 3923036 3923043 7 OsKitaake04g018900
Deletion Chr10 4231436 4231562 126
Deletion Chr5 5305307 5305328 21
Deletion Chr2 5958533 5958541 8
Deletion Chr10 8120607 8120608 1
Deletion Chr12 8900280 8900282 2
Deletion Chr4 10248875 10248876 1
Deletion Chr11 14505001 14730000 224999 12
Deletion Chr11 14736001 14924000 187999 9
Deletion Chr1 15710263 15710272 9
Deletion Chr5 29196001 29585000 388999 51
Deletion Chr2 29914151 29914152 1
Deletion Chr4 30407928 30407940 12 OsKitaake04g234100
Deletion Chr3 30847293 30847294 1
Deletion Chr4 32780571 32780573 2

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr12 4052293 4052296 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 7519223 7709909
Inversion Chr6 7519227 7709927
Inversion Chr10 8701484 8802381 OsKitaake10g053300

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 9096515 Chr8 24554838 OsKitaake08g191100
Translocation Chr9 9548897 Chr8 24555103 OsKitaake08g191100
Translocation Chr11 14502409 Chr4 23905704
Translocation Chr10 18912667 Chr5 29191869 OsKitaake05g276600
Translocation Chr10 18923373 Chr5 29586901 OsKitaake05g281700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5359677	G-A	Hetero	INTERGENIC
SBS	Chr1	5646194	A-G	Hetero	INTERGENIC
SBS	Chr1	9732755	C-T	Hetero	INTERGENIC
SBS	Chr1	11602652	C-G	Hetero	INTERGENIC
SBS	Chr1	14690386	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g166200
SBS	Chr1	20243777	C-T	Hetero	INTERGENIC
SBS	Chr1	33088496	G-A	Hetero	INTERGENIC
SBS	Chr1	41896801	A-T	Homo	UTR_3_PRIME
SBS	Chr1	41896802	A-T	Homo	UTR_3_PRIME
SBS	Chr1	44249342	C-T	Hetero	INTERGENIC
SBS	Chr2	5523208	G-A	Hetero	INTERGENIC
SBS	Chr2	19259076	C-A	Hetero	INTRON
SBS	Chr2	27022244	T-G	Homo	INTERGENIC
SBS	Chr3	26569121	G-T	Homo	INTERGENIC
SBS	Chr3	32436942	G-C	Hetero	INTERGENIC
SBS	Chr4	9155572	C-T	Homo	INTERGENIC
SBS	Chr4	11238121	C-T	Homo	INTERGENIC
SBS	Chr4	13617304	C-T	Hetero	INTERGENIC
SBS	Chr4	15965123	T-C	Hetero	INTERGENIC
SBS	Chr4	17172413	T-C	Homo	INTERGENIC
SBS	Chr4	24852057	G-T	Homo	INTERGENIC
SBS	Chr5	8165566	G-C	Homo	INTERGENIC
SBS	Chr5	17514167	C-T	Homo	INTERGENIC
SBS	Chr5	20203588	C-G	Hetero	INTERGENIC
SBS	Chr5	20610459	G-A	Hetero	INTERGENIC
SBS	Chr5	30037158	G-T	Hetero	INTERGENIC
SBS	Chr5	30037160	C-T	Hetero	INTERGENIC
SBS	Chr6	10756172	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g120501
SBS	Chr6	11491284	A-T	Hetero	INTRON
SBS	Chr6	11948097	G-C	Hetero	UTR_3_PRIME
SBS	Chr6	22122460	G-T	Hetero	INTERGENIC
SBS	Chr7	5432292	A-G	Homo	INTRON
SBS	Chr7	14123854	G-T	Homo	INTERGENIC
SBS	Chr7	18924593	T-C	Hetero	INTERGENIC
SBS	Chr7	19037345	C-T	Hetero	INTERGENIC
SBS	Chr8	24153185	A-C	Homo	INTERGENIC
SBS	Chr10	16162500	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g108300
SBS	Chr10	18407694	T-A	Homo	INTERGENIC
SBS	Chr10	19009716	A-T	Homo	INTERGENIC
SBS	Chr10	22475654	G-A	Hetero	INTERGENIC
SBS	Chr11	28604969	G-T	Hetero	INTRON
SBS	Chr12	1715775	A-T	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	3923036	3923043	7	OsKitaake04g018900
Deletion	Chr10	4231436	4231562	126
Deletion	Chr5	5305307	5305328	21
Deletion	Chr2	5958533	5958541	8
Deletion	Chr10	8120607	8120608	1
Deletion	Chr12	8900280	8900282	2
Deletion	Chr4	10248875	10248876	1
Deletion	Chr11	14505001	14730000	224999	12
Deletion	Chr11	14736001	14924000	187999	9
Deletion	Chr1	15710263	15710272	9
Deletion	Chr5	29196001	29585000	388999	51
Deletion	Chr2	29914151	29914152	1
Deletion	Chr4	30407928	30407940	12	OsKitaake04g234100
Deletion	Chr3	30847293	30847294	1
Deletion	Chr4	32780571	32780573	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	7519223	7709909
Inversion	Chr6	7519227	7709927
Inversion	Chr10	8701484	8802381	OsKitaake10g053300

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes