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Mutant Information

Mutant Name	FN2149-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2149-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7357246 T-C Hetero INTERGENIC
SBS Chr1 13142880 C-A Homo INTERGENIC
SBS Chr1 21731317 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g209766
SBS Chr1 29004198 T-G Hetero INTERGENIC
SBS Chr1 34886738 G-A Hetero INTERGENIC
SBS Chr2 24673058 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g245400
SBS Chr2 30397073 A-C Homo INTERGENIC
SBS Chr3 10642047 A-G Hetero INTERGENIC
SBS Chr3 11672759 A-C Hetero INTERGENIC
SBS Chr3 20001976 C-T Hetero INTERGENIC
SBS Chr3 26251298 A-C Hetero INTERGENIC
SBS Chr3 34849671 G-A Hetero UTR_3_PRIME
SBS Chr4 14265944 A-G Hetero INTERGENIC
SBS Chr4 24592708 G-A Homo INTERGENIC
SBS Chr4 28368025 G-T Homo INTERGENIC
SBS Chr5 5456487 C-A Homo INTERGENIC
SBS Chr6 13140067 G-A Hetero INTERGENIC
SBS Chr6 16601742 C-T Hetero INTERGENIC
SBS Chr6 24135259 A-G Hetero INTERGENIC
SBS Chr6 24274282 A-T Hetero INTERGENIC
SBS Chr7 2449133 T-G Homo INTERGENIC
SBS Chr7 12722461 C-A Hetero INTERGENIC
SBS Chr7 14632137 C-G Hetero INTERGENIC
SBS Chr7 15979982 C-A Hetero INTERGENIC
SBS Chr8 7392145 C-T Homo INTERGENIC
SBS Chr8 9793537 G-A Homo INTERGENIC
SBS Chr8 11303626 G-A Hetero INTERGENIC
SBS Chr8 15024492 A-C Hetero INTERGENIC
SBS Chr8 18212230 G-A Homo INTERGENIC
SBS Chr9 7126473 G-T Homo INTERGENIC
SBS Chr9 20892926 G-T Hetero INTERGENIC
SBS Chr9 20892927 A-T Hetero INTERGENIC
SBS Chr11 10699034 G-A Homo INTERGENIC
SBS Chr12 7346258 C-T Hetero INTERGENIC
SBS Chr12 8417723 C-G Hetero INTRON
SBS Chr12 10764961 G-A Hetero INTERGENIC
SBS Chr12 12247673 T-A Hetero INTERGENIC
SBS Chr12 21378886 C-T Hetero INTERGENIC

Deletions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 2576999 2577000 1
Deletion Chr2 6965001 6993000 27999
Deletion Chr4 17689287 17689291 4
Deletion Chr10 20100763 20100771 8
Deletion Chr3 26640921 26640985 64
Deletion Chr4 36318692 36318697 5

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 9765307 9765311 3
Insertion Chr1 38734287 38734295 7
Insertion Chr4 17689269 17689272 2
Insertion Chr4 22084898 22084901 2
Insertion Chr5 23342413 23342416 2
Insertion Chr7 4684812 4684815 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 12373142 Chr4 28897263 OsKitaake04g217200
Translocation Chr6 12373148 Chr4 28897542 OsKitaake04g217200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7357246	T-C	Hetero	INTERGENIC
SBS	Chr1	13142880	C-A	Homo	INTERGENIC
SBS	Chr1	21731317	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g209766
SBS	Chr1	29004198	T-G	Hetero	INTERGENIC
SBS	Chr1	34886738	G-A	Hetero	INTERGENIC
SBS	Chr2	24673058	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g245400
SBS	Chr2	30397073	A-C	Homo	INTERGENIC
SBS	Chr3	10642047	A-G	Hetero	INTERGENIC
SBS	Chr3	11672759	A-C	Hetero	INTERGENIC
SBS	Chr3	20001976	C-T	Hetero	INTERGENIC
SBS	Chr3	26251298	A-C	Hetero	INTERGENIC
SBS	Chr3	34849671	G-A	Hetero	UTR_3_PRIME
SBS	Chr4	14265944	A-G	Hetero	INTERGENIC
SBS	Chr4	24592708	G-A	Homo	INTERGENIC
SBS	Chr4	28368025	G-T	Homo	INTERGENIC
SBS	Chr5	5456487	C-A	Homo	INTERGENIC
SBS	Chr6	13140067	G-A	Hetero	INTERGENIC
SBS	Chr6	16601742	C-T	Hetero	INTERGENIC
SBS	Chr6	24135259	A-G	Hetero	INTERGENIC
SBS	Chr6	24274282	A-T	Hetero	INTERGENIC
SBS	Chr7	2449133	T-G	Homo	INTERGENIC
SBS	Chr7	12722461	C-A	Hetero	INTERGENIC
SBS	Chr7	14632137	C-G	Hetero	INTERGENIC
SBS	Chr7	15979982	C-A	Hetero	INTERGENIC
SBS	Chr8	7392145	C-T	Homo	INTERGENIC
SBS	Chr8	9793537	G-A	Homo	INTERGENIC
SBS	Chr8	11303626	G-A	Hetero	INTERGENIC
SBS	Chr8	15024492	A-C	Hetero	INTERGENIC
SBS	Chr8	18212230	G-A	Homo	INTERGENIC
SBS	Chr9	7126473	G-T	Homo	INTERGENIC
SBS	Chr9	20892926	G-T	Hetero	INTERGENIC
SBS	Chr9	20892927	A-T	Hetero	INTERGENIC
SBS	Chr11	10699034	G-A	Homo	INTERGENIC
SBS	Chr12	7346258	C-T	Hetero	INTERGENIC
SBS	Chr12	8417723	C-G	Hetero	INTRON
SBS	Chr12	10764961	G-A	Hetero	INTERGENIC
SBS	Chr12	12247673	T-A	Hetero	INTERGENIC
SBS	Chr12	21378886	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	2576999	2577000	1
Deletion	Chr2	6965001	6993000	27999
Deletion	Chr4	17689287	17689291	4
Deletion	Chr10	20100763	20100771	8
Deletion	Chr3	26640921	26640985	64
Deletion	Chr4	36318692	36318697	5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	12373142	Chr4	28897263	OsKitaake04g217200
Translocation	Chr6	12373148	Chr4	28897542	OsKitaake04g217200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes