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Mutant Information

Mutant Name	FN2150-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2150-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 43485695 C-T Homo START_GAINED
SBS Chr2 2528282 G-A Hetero INTERGENIC
SBS Chr2 10802390 T-C Hetero INTERGENIC
SBS Chr2 22272847 T-G Hetero INTERGENIC
SBS Chr2 22450800 G-A Hetero INTERGENIC
SBS Chr2 33476719 G-A Hetero INTERGENIC
SBS Chr2 34475752 C-T Hetero INTERGENIC
SBS Chr5 2181602 A-T Hetero INTERGENIC
SBS Chr5 15536311 C-G Hetero INTERGENIC
SBS Chr5 23752452 T-C Hetero INTRON
SBS Chr5 25299514 A-G Homo INTERGENIC
SBS Chr6 8984278 C-T Hetero INTRON
SBS Chr6 12928088 C-T Hetero INTERGENIC
SBS Chr6 14913568 G-A Hetero INTERGENIC
SBS Chr6 23140064 T-G Homo INTERGENIC
SBS Chr6 23970173 A-G Homo SYNONYMOUS_CODING
SBS Chr6 29927449 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake06g280300
SBS Chr7 16869583 A-G Hetero INTERGENIC
SBS Chr7 17472074 G-T Hetero INTERGENIC
SBS Chr8 3449957 T-A Hetero INTERGENIC
SBS Chr8 17879485 C-A Hetero INTERGENIC
SBS Chr8 26278639 C-T Hetero INTERGENIC
SBS Chr10 4736932 C-T Homo INTERGENIC
SBS Chr10 16757621 A-G Hetero INTERGENIC
SBS Chr10 20467890 C-T Hetero UTR_3_PRIME
SBS Chr10 23593372 C-T Homo INTERGENIC
SBS Chr11 9006263 C-T Hetero INTERGENIC
SBS Chr11 16168481 G-T Hetero INTERGENIC
SBS Chr12 24021093 T-C Hetero INTERGENIC

Deletions: 30

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 1044950 1044952 2
Deletion Chr11 1382071 1382079 8
Deletion Chr7 2485001 2516000 30999 3
Deletion Chr10 4146503 4146504 1
Deletion Chr11 4543790 4543793 3
Deletion Chr11 6917001 6938000 20999 3
Deletion Chr1 7034001 7051000 16999 5
Deletion Chr9 7539001 7576000 36999 2
Deletion Chr10 7746001 7768000 21999 OsKitaake10g049250
Deletion Chr6 8611001 8639000 27999 OsKitaake06g106200
Deletion Chr9 9581001 9597000 15999 OsKitaake09g058400
Deletion Chr12 12584001 12618000 33999 5
Deletion Chr9 12635637 12635639 2
Deletion Chr11 13292001 13313000 20999 OsKitaake11g115101
Deletion Chr5 14076001 14092000 15999
Deletion Chr1 18920001 18947000 26999 3
Deletion Chr6 19319001 19344000 24999 OsKitaake06g174100
Deletion Chr4 19334001 19373000 38999 3
Deletion Chr11 19441001 19483000 41999 3
Deletion Chr11 19552858 19552859 1
Deletion Chr1 21392910 21392916 6
Deletion Chr8 22456001 22485000 28999 2
Deletion Chr11 25312001 25343000 30999 4
Deletion Chr3 25349001 25377000 27999
Deletion Chr3 26630001 26648000 17999
Deletion Chr5 29881708 29881711 3 OsKitaake05g286300
Deletion Chr1 34114001 34148000 33999 OsKitaake01g351700
Deletion Chr1 40074476 40074481 5
Deletion Chr1 40128424 40128425 1
Deletion Chr1 41343001 41372000 28999

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr9 3078804 3078807 2
Insertion Chr6 7838 7840 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 15109156 15301468 OsKitaake07g126500
Inversion Chr7 15109162 15301472 OsKitaake07g126500

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 18934 Chr3 23101823
Translocation Chr5 19824 Chr3 23101825
Translocation Chr8 9551268 Chr4 16449350

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	43485695	C-T	Homo	START_GAINED
SBS	Chr2	2528282	G-A	Hetero	INTERGENIC
SBS	Chr2	10802390	T-C	Hetero	INTERGENIC
SBS	Chr2	22272847	T-G	Hetero	INTERGENIC
SBS	Chr2	22450800	G-A	Hetero	INTERGENIC
SBS	Chr2	33476719	G-A	Hetero	INTERGENIC
SBS	Chr2	34475752	C-T	Hetero	INTERGENIC
SBS	Chr5	2181602	A-T	Hetero	INTERGENIC
SBS	Chr5	15536311	C-G	Hetero	INTERGENIC
SBS	Chr5	23752452	T-C	Hetero	INTRON
SBS	Chr5	25299514	A-G	Homo	INTERGENIC
SBS	Chr6	8984278	C-T	Hetero	INTRON
SBS	Chr6	12928088	C-T	Hetero	INTERGENIC
SBS	Chr6	14913568	G-A	Hetero	INTERGENIC
SBS	Chr6	23140064	T-G	Homo	INTERGENIC
SBS	Chr6	23970173	A-G	Homo	SYNONYMOUS_CODING
SBS	Chr6	29927449	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g280300
SBS	Chr7	16869583	A-G	Hetero	INTERGENIC
SBS	Chr7	17472074	G-T	Hetero	INTERGENIC
SBS	Chr8	3449957	T-A	Hetero	INTERGENIC
SBS	Chr8	17879485	C-A	Hetero	INTERGENIC
SBS	Chr8	26278639	C-T	Hetero	INTERGENIC
SBS	Chr10	4736932	C-T	Homo	INTERGENIC
SBS	Chr10	16757621	A-G	Hetero	INTERGENIC
SBS	Chr10	20467890	C-T	Hetero	UTR_3_PRIME
SBS	Chr10	23593372	C-T	Homo	INTERGENIC
SBS	Chr11	9006263	C-T	Hetero	INTERGENIC
SBS	Chr11	16168481	G-T	Hetero	INTERGENIC
SBS	Chr12	24021093	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	1044950	1044952	2
Deletion	Chr11	1382071	1382079	8
Deletion	Chr7	2485001	2516000	30999	3
Deletion	Chr10	4146503	4146504	1
Deletion	Chr11	4543790	4543793	3
Deletion	Chr11	6917001	6938000	20999	3
Deletion	Chr1	7034001	7051000	16999	5
Deletion	Chr9	7539001	7576000	36999	2
Deletion	Chr10	7746001	7768000	21999	OsKitaake10g049250
Deletion	Chr6	8611001	8639000	27999	OsKitaake06g106200
Deletion	Chr9	9581001	9597000	15999	OsKitaake09g058400
Deletion	Chr12	12584001	12618000	33999	5
Deletion	Chr9	12635637	12635639	2
Deletion	Chr11	13292001	13313000	20999	OsKitaake11g115101
Deletion	Chr5	14076001	14092000	15999
Deletion	Chr1	18920001	18947000	26999	3
Deletion	Chr6	19319001	19344000	24999	OsKitaake06g174100
Deletion	Chr4	19334001	19373000	38999	3
Deletion	Chr11	19441001	19483000	41999	3
Deletion	Chr11	19552858	19552859	1
Deletion	Chr1	21392910	21392916	6
Deletion	Chr8	22456001	22485000	28999	2
Deletion	Chr11	25312001	25343000	30999	4
Deletion	Chr3	25349001	25377000	27999
Deletion	Chr3	26630001	26648000	17999
Deletion	Chr5	29881708	29881711	3	OsKitaake05g286300
Deletion	Chr1	34114001	34148000	33999	OsKitaake01g351700
Deletion	Chr1	40074476	40074481	5
Deletion	Chr1	40128424	40128425	1
Deletion	Chr1	41343001	41372000	28999

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	15109156	15301468	OsKitaake07g126500
Inversion	Chr7	15109162	15301472	OsKitaake07g126500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes