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Mutant Information

Mutant Name	FN2152-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2152-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 21

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11389018 T-G Hetero SPLICE_SITE_ACCEPTOR OsKitaake01g139200
SBS Chr1 30638496 C-A Homo INTRON
SBS Chr1 35776892 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g378900
SBS Chr2 33930098 G-C Hetero INTRON
SBS Chr3 12555967 C-T Hetero UTR_5_PRIME
SBS Chr3 21959213 G-A Hetero INTERGENIC
SBS Chr4 3287114 C-T Hetero INTERGENIC
SBS Chr4 25961990 C-T Hetero INTERGENIC
SBS Chr5 10844726 G-A Hetero INTERGENIC
SBS Chr6 669124 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake06g006500
SBS Chr6 7320146 C-A Homo INTERGENIC
SBS Chr6 23652392 A-C Homo INTERGENIC
SBS Chr6 26291415 A-G Hetero UTR_3_PRIME
SBS Chr7 6541694 C-T Hetero INTERGENIC
SBS Chr7 13787063 G-A Hetero INTERGENIC
SBS Chr7 21809995 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g183300
SBS Chr8 789747 A-G Homo INTERGENIC
SBS Chr8 12760929 T-G Homo INTERGENIC
SBS Chr11 1027297 C-T Homo SYNONYMOUS_CODING
SBS Chr11 3262795 T-C Hetero INTERGENIC
SBS Chr11 16201988 G-A Hetero INTERGENIC

Deletions: 30

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 21854 21855 1
Deletion Chr6 60803 60804 1
Deletion Chr8 789517 789534 17
Deletion Chr12 1173001 1198000 24999
Deletion Chr6 7243280 7243287 7
Deletion Chr11 7607001 7624000 16999
Deletion Chr3 9180001 9192000 11999 OsKitaake03g125600
Deletion Chr12 9727001 9753000 25999
Deletion Chr2 11414001 11427000 12999 OsKitaake02g132200
Deletion Chr8 13293628 13293635 7
Deletion Chr10 14038001 14062000 23999 3
Deletion Chr5 14072001 14093000 20999
Deletion Chr10 16403001 16422000 18999
Deletion Chr5 20804845 20804849 4 OsKitaake05g166400
Deletion Chr5 21312855 21312856 1
Deletion Chr5 21903001 21932000 28999
Deletion Chr4 23002001 23018000 15999
Deletion Chr5 24864001 24879000 14999
Deletion Chr12 25273465 25273469 4
Deletion Chr7 25508001 25524000 15999
Deletion Chr12 26581933 26581935 2
Deletion Chr3 27758492 27758494 2
Deletion Chr8 28903001 28925000 21999 OsKitaake08g249900
Deletion Chr2 29387001 29407000 19999
Deletion Chr3 29703678 29703680 2
Deletion Chr4 30514001 30531000 16999
Deletion Chr4 34656001 34679000 22999 OsKitaake04g289400
Deletion Chr2 35944001 35964000 19999 OsKitaake02g378300
Deletion Chr1 36745695 36745698 3 OsKitaake01g390800
Deletion Chr1 42873001 42892000 18999

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr10 1149788 1149790 1
Insertion Chr11 12445264 12445318 53

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 12824621 Chr4 14524754
Translocation Chr9 12824652 Chr4 14440305
Translocation Chr5 20723253 Chr1 41891395 OsKitaake01g458600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11389018	T-G	Hetero	SPLICE_SITE_ACCEPTOR	OsKitaake01g139200
SBS	Chr1	30638496	C-A	Homo	INTRON
SBS	Chr1	35776892	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g378900
SBS	Chr2	33930098	G-C	Hetero	INTRON
SBS	Chr3	12555967	C-T	Hetero	UTR_5_PRIME
SBS	Chr3	21959213	G-A	Hetero	INTERGENIC
SBS	Chr4	3287114	C-T	Hetero	INTERGENIC
SBS	Chr4	25961990	C-T	Hetero	INTERGENIC
SBS	Chr5	10844726	G-A	Hetero	INTERGENIC
SBS	Chr6	669124	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g006500
SBS	Chr6	7320146	C-A	Homo	INTERGENIC
SBS	Chr6	23652392	A-C	Homo	INTERGENIC
SBS	Chr6	26291415	A-G	Hetero	UTR_3_PRIME
SBS	Chr7	6541694	C-T	Hetero	INTERGENIC
SBS	Chr7	13787063	G-A	Hetero	INTERGENIC
SBS	Chr7	21809995	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g183300
SBS	Chr8	789747	A-G	Homo	INTERGENIC
SBS	Chr8	12760929	T-G	Homo	INTERGENIC
SBS	Chr11	1027297	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr11	3262795	T-C	Hetero	INTERGENIC
SBS	Chr11	16201988	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	21854	21855	1
Deletion	Chr6	60803	60804	1
Deletion	Chr8	789517	789534	17
Deletion	Chr12	1173001	1198000	24999
Deletion	Chr6	7243280	7243287	7
Deletion	Chr11	7607001	7624000	16999
Deletion	Chr3	9180001	9192000	11999	OsKitaake03g125600
Deletion	Chr12	9727001	9753000	25999
Deletion	Chr2	11414001	11427000	12999	OsKitaake02g132200
Deletion	Chr8	13293628	13293635	7
Deletion	Chr10	14038001	14062000	23999	3
Deletion	Chr5	14072001	14093000	20999
Deletion	Chr10	16403001	16422000	18999
Deletion	Chr5	20804845	20804849	4	OsKitaake05g166400
Deletion	Chr5	21312855	21312856	1
Deletion	Chr5	21903001	21932000	28999
Deletion	Chr4	23002001	23018000	15999
Deletion	Chr5	24864001	24879000	14999
Deletion	Chr12	25273465	25273469	4
Deletion	Chr7	25508001	25524000	15999
Deletion	Chr12	26581933	26581935	2
Deletion	Chr3	27758492	27758494	2
Deletion	Chr8	28903001	28925000	21999	OsKitaake08g249900
Deletion	Chr2	29387001	29407000	19999
Deletion	Chr3	29703678	29703680	2
Deletion	Chr4	30514001	30531000	16999
Deletion	Chr4	34656001	34679000	22999	OsKitaake04g289400
Deletion	Chr2	35944001	35964000	19999	OsKitaake02g378300
Deletion	Chr1	36745695	36745698	3	OsKitaake01g390800
Deletion	Chr1	42873001	42892000	18999

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	12824621	Chr4	14524754
Translocation	Chr9	12824652	Chr4	14440305
Translocation	Chr5	20723253	Chr1	41891395	OsKitaake01g458600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes