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Mutant Information

Mutant Name	FN2155-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2155-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 20

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6521981 A-T Hetero INTRON
SBS Chr2 74066 T-C Homo INTERGENIC
SBS Chr2 25692038 A-G Hetero INTERGENIC
SBS Chr3 11138770 G-A Hetero INTERGENIC
SBS Chr3 19536269 G-A Hetero INTERGENIC
SBS Chr4 25161939 C-T Hetero UTR_3_PRIME
SBS Chr5 24388304 A-C Hetero INTERGENIC
SBS Chr5 27467618 G-A Homo INTERGENIC
SBS Chr6 8023025 G-A Hetero INTERGENIC
SBS Chr6 18758657 A-G Hetero INTERGENIC
SBS Chr6 27606763 A-T Hetero INTERGENIC
SBS Chr7 380736 G-A Hetero INTERGENIC
SBS Chr7 27287484 T-A Homo INTERGENIC
SBS Chr8 21212567 G-T Hetero INTERGENIC
SBS Chr8 21212568 C-T Hetero INTERGENIC
SBS Chr9 20581051 A-T Hetero SYNONYMOUS_CODING
SBS Chr9 22562896 T-A Hetero INTERGENIC
SBS Chr11 1792120 G-A Homo INTERGENIC
SBS Chr11 11508908 G-T Hetero INTERGENIC
SBS Chr11 25421300 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g204500

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 791709 791720 11
Deletion Chr6 4119557 4119560 3
Deletion Chr11 6116001 6157000 40999 2
Deletion Chr11 6176001 6192000 15999 4
Deletion Chr4 13171382 13171383 1
Deletion Chr2 14001840 14001844 4
Deletion Chr4 15498367 15498493 126
Deletion Chr1 17242104 17242106 2
Deletion Chr10 19760001 19766000 5999 3
Deletion Chr10 20255972 20255974 2
Deletion Chr5 27669337 27669338 1

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr11 25036464 25036467 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6521981	A-T	Hetero	INTRON
SBS	Chr2	74066	T-C	Homo	INTERGENIC
SBS	Chr2	25692038	A-G	Hetero	INTERGENIC
SBS	Chr3	11138770	G-A	Hetero	INTERGENIC
SBS	Chr3	19536269	G-A	Hetero	INTERGENIC
SBS	Chr4	25161939	C-T	Hetero	UTR_3_PRIME
SBS	Chr5	24388304	A-C	Hetero	INTERGENIC
SBS	Chr5	27467618	G-A	Homo	INTERGENIC
SBS	Chr6	8023025	G-A	Hetero	INTERGENIC
SBS	Chr6	18758657	A-G	Hetero	INTERGENIC
SBS	Chr6	27606763	A-T	Hetero	INTERGENIC
SBS	Chr7	380736	G-A	Hetero	INTERGENIC
SBS	Chr7	27287484	T-A	Homo	INTERGENIC
SBS	Chr8	21212567	G-T	Hetero	INTERGENIC
SBS	Chr8	21212568	C-T	Hetero	INTERGENIC
SBS	Chr9	20581051	A-T	Hetero	SYNONYMOUS_CODING
SBS	Chr9	22562896	T-A	Hetero	INTERGENIC
SBS	Chr11	1792120	G-A	Homo	INTERGENIC
SBS	Chr11	11508908	G-T	Hetero	INTERGENIC
SBS	Chr11	25421300	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g204500

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	791709	791720	11
Deletion	Chr6	4119557	4119560	3
Deletion	Chr11	6116001	6157000	40999	2
Deletion	Chr11	6176001	6192000	15999	4
Deletion	Chr4	13171382	13171383	1
Deletion	Chr2	14001840	14001844	4
Deletion	Chr4	15498367	15498493	126
Deletion	Chr1	17242104	17242106	2
Deletion	Chr10	19760001	19766000	5999	3
Deletion	Chr10	20255972	20255974	2
Deletion	Chr5	27669337	27669338	1

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes