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Mutant Information

Mutant Name	FN2157-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2157-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 14061180 C-A Homo INTERGENIC
SBS Chr2 19518005 A-G Hetero INTERGENIC
SBS Chr2 33817185 G-A Hetero INTERGENIC
SBS Chr3 6487002 C-T Hetero INTERGENIC
SBS Chr3 6528465 G-A Hetero INTRON
SBS Chr3 8489444 T-A Hetero INTERGENIC
SBS Chr4 21510546 A-G Homo INTERGENIC
SBS Chr5 191146 G-A Homo INTRON
SBS Chr5 23070548 A-T Homo INTERGENIC
SBS Chr6 6992562 C-G Hetero INTERGENIC
SBS Chr6 12511713 C-G Hetero INTERGENIC
SBS Chr6 12511717 C-T Hetero INTERGENIC
SBS Chr7 13288931 T-A Hetero INTERGENIC
SBS Chr7 22788319 T-G Hetero SYNONYMOUS_CODING
SBS Chr7 26979984 A-G Hetero INTRON
SBS Chr8 5886057 A-T Hetero INTERGENIC
SBS Chr8 11183540 T-C Hetero INTERGENIC
SBS Chr8 17504269 T-A Hetero INTERGENIC
SBS Chr8 25456291 G-T Hetero INTRON
SBS Chr8 25456292 A-T Hetero INTRON
SBS Chr9 7065426 C-T Homo INTERGENIC
SBS Chr9 20619958 C-T Hetero INTERGENIC
SBS Chr10 1980571 G-A Hetero INTERGENIC
SBS Chr11 19075887 C-T Homo INTERGENIC
SBS Chr11 20677416 C-A Homo INTRON
SBS Chr11 28357867 G-A Homo INTERGENIC
SBS Chr11 28409056 T-A Hetero INTERGENIC
SBS Chr11 28964216 G-A Homo INTERGENIC
SBS Chr12 2049204 A-G Hetero INTERGENIC
SBS Chr12 9292754 T-A Hetero INTERGENIC
SBS Chr12 11724490 G-A Hetero INTERGENIC
SBS Chr12 18966767 C-T Homo INTERGENIC

Deletions: 39

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 639455 639467 12
Deletion Chr10 1641001 1698000 56999 2
Deletion Chr7 2765001 2794000 28999 2
Deletion Chr1 3836001 3867000 30999
Deletion Chr6 4127001 4158000 30999
Deletion Chr7 4712001 4735000 22999
Deletion Chr4 5384001 5439000 54999 OsKitaake04g026300
Deletion Chr1 6566001 6577000 10999 2
Deletion Chr6 6790768 6790778 10
Deletion Chr11 9224001 9246000 21999 2
Deletion Chr1 9608359 9608375 16
Deletion Chr1 10210001 10237000 26999 2
Deletion Chr4 10253001 10268000 14999 3
Deletion Chr1 10441705 10441707 2
Deletion Chr11 10893752 10893753 1
Deletion Chr9 10899001 10939000 39999 3
Deletion Chr9 10973001 10989000 15999 OsKitaake09g068200
Deletion Chr11 13850324 13850325 1
Deletion Chr11 14794325 14794326 1
Deletion Chr9 14873001 14898000 24999 OsKitaake09g102400
Deletion Chr2 14903758 14903759 1
Deletion Chr12 14910183 14910184 1
Deletion Chr9 15801001 15843000 41999 3
Deletion Chr4 19339001 19371000 31999 3
Deletion Chr11 19438001 19482000 43999 3
Deletion Chr4 20663001 20682000 18999 OsKitaake04g111800
Deletion Chr1 20750001 20765000 14999
Deletion Chr4 22007001 22034000 26999 3
Deletion Chr3 22036650 22036653 3
Deletion Chr6 22150013 22150033 20
Deletion Chr9 22281001 22316000 34999 3
Deletion Chr9 22391001 22410000 18999 OsKitaake09g203200
Deletion Chr4 23127001 23142000 14999
Deletion Chr3 24806001 24831000 24999
Deletion Chr2 25558001 25578000 19999 3
Deletion Chr5 25702001 25722000 19999 2
Deletion Chr8 27730113 27730116 3
Deletion Chr2 28238001 28266000 27999 2
Deletion Chr1 41324001 41370000 45999 2

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 24259226 24259229 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 14038126 14188685 OsKitaake10g087000
Inversion Chr7 18550128 18573060
Inversion Chr7 18554358 18573061
Inversion Chr8 24322280 24740036

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 2556384 Chr6 30570864 OsKitaake06g288100
Translocation Chr12 2556391 Chr6 30570865 OsKitaake06g288100
Translocation Chr9 12180223 Chr2 37143307
Translocation Chr9 12185462 Chr2 37143288
Translocation Chr11 29181300 Chr8 24322267 OsKitaake11g239200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14061180	C-A	Homo	INTERGENIC
SBS	Chr2	19518005	A-G	Hetero	INTERGENIC
SBS	Chr2	33817185	G-A	Hetero	INTERGENIC
SBS	Chr3	6487002	C-T	Hetero	INTERGENIC
SBS	Chr3	6528465	G-A	Hetero	INTRON
SBS	Chr3	8489444	T-A	Hetero	INTERGENIC
SBS	Chr4	21510546	A-G	Homo	INTERGENIC
SBS	Chr5	191146	G-A	Homo	INTRON
SBS	Chr5	23070548	A-T	Homo	INTERGENIC
SBS	Chr6	6992562	C-G	Hetero	INTERGENIC
SBS	Chr6	12511713	C-G	Hetero	INTERGENIC
SBS	Chr6	12511717	C-T	Hetero	INTERGENIC
SBS	Chr7	13288931	T-A	Hetero	INTERGENIC
SBS	Chr7	22788319	T-G	Hetero	SYNONYMOUS_CODING
SBS	Chr7	26979984	A-G	Hetero	INTRON
SBS	Chr8	5886057	A-T	Hetero	INTERGENIC
SBS	Chr8	11183540	T-C	Hetero	INTERGENIC
SBS	Chr8	17504269	T-A	Hetero	INTERGENIC
SBS	Chr8	25456291	G-T	Hetero	INTRON
SBS	Chr8	25456292	A-T	Hetero	INTRON
SBS	Chr9	7065426	C-T	Homo	INTERGENIC
SBS	Chr9	20619958	C-T	Hetero	INTERGENIC
SBS	Chr10	1980571	G-A	Hetero	INTERGENIC
SBS	Chr11	19075887	C-T	Homo	INTERGENIC
SBS	Chr11	20677416	C-A	Homo	INTRON
SBS	Chr11	28357867	G-A	Homo	INTERGENIC
SBS	Chr11	28409056	T-A	Hetero	INTERGENIC
SBS	Chr11	28964216	G-A	Homo	INTERGENIC
SBS	Chr12	2049204	A-G	Hetero	INTERGENIC
SBS	Chr12	9292754	T-A	Hetero	INTERGENIC
SBS	Chr12	11724490	G-A	Hetero	INTERGENIC
SBS	Chr12	18966767	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	639455	639467	12
Deletion	Chr10	1641001	1698000	56999	2
Deletion	Chr7	2765001	2794000	28999	2
Deletion	Chr1	3836001	3867000	30999
Deletion	Chr6	4127001	4158000	30999
Deletion	Chr7	4712001	4735000	22999
Deletion	Chr4	5384001	5439000	54999	OsKitaake04g026300
Deletion	Chr1	6566001	6577000	10999	2
Deletion	Chr6	6790768	6790778	10
Deletion	Chr11	9224001	9246000	21999	2
Deletion	Chr1	9608359	9608375	16
Deletion	Chr1	10210001	10237000	26999	2
Deletion	Chr4	10253001	10268000	14999	3
Deletion	Chr1	10441705	10441707	2
Deletion	Chr11	10893752	10893753	1
Deletion	Chr9	10899001	10939000	39999	3
Deletion	Chr9	10973001	10989000	15999	OsKitaake09g068200
Deletion	Chr11	13850324	13850325	1
Deletion	Chr11	14794325	14794326	1
Deletion	Chr9	14873001	14898000	24999	OsKitaake09g102400
Deletion	Chr2	14903758	14903759	1
Deletion	Chr12	14910183	14910184	1
Deletion	Chr9	15801001	15843000	41999	3
Deletion	Chr4	19339001	19371000	31999	3
Deletion	Chr11	19438001	19482000	43999	3
Deletion	Chr4	20663001	20682000	18999	OsKitaake04g111800
Deletion	Chr1	20750001	20765000	14999
Deletion	Chr4	22007001	22034000	26999	3
Deletion	Chr3	22036650	22036653	3
Deletion	Chr6	22150013	22150033	20
Deletion	Chr9	22281001	22316000	34999	3
Deletion	Chr9	22391001	22410000	18999	OsKitaake09g203200
Deletion	Chr4	23127001	23142000	14999
Deletion	Chr3	24806001	24831000	24999
Deletion	Chr2	25558001	25578000	19999	3
Deletion	Chr5	25702001	25722000	19999	2
Deletion	Chr8	27730113	27730116	3
Deletion	Chr2	28238001	28266000	27999	2
Deletion	Chr1	41324001	41370000	45999	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	14038126	14188685	OsKitaake10g087000
Inversion	Chr7	18550128	18573060
Inversion	Chr7	18554358	18573061
Inversion	Chr8	24322280	24740036

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes