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Mutant Information

Mutant Name	FN2158-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2158-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 34956669 G-A Hetero INTERGENIC
SBS Chr1 36344274 C-T Hetero INTERGENIC
SBS Chr2 12112160 T-A Hetero UTR_5_PRIME
SBS Chr2 17448507 C-A Homo INTRON
SBS Chr2 32251741 T-A Homo INTERGENIC
SBS Chr3 16773878 C-G Hetero INTERGENIC
SBS Chr3 20353590 G-C Homo INTERGENIC
SBS Chr3 21976513 C-T Homo INTERGENIC
SBS Chr4 5062331 T-C Hetero INTERGENIC
SBS Chr4 13722815 G-A Hetero INTERGENIC
SBS Chr4 15832643 C-T Homo INTERGENIC
SBS Chr4 19279966 C-A Homo INTERGENIC
SBS Chr4 23802187 A-C Hetero INTRON
SBS Chr4 31852290 A-G Homo INTRON
SBS Chr6 2610301 A-G Homo INTERGENIC
SBS Chr6 7530066 G-C Homo INTERGENIC
SBS Chr6 13986115 C-T Hetero INTRON
SBS Chr7 5477592 T-C Hetero INTERGENIC
SBS Chr7 26764395 A-T Homo UTR_3_PRIME
SBS Chr8 13378055 C-G Hetero INTRON
SBS Chr9 10786842 G-A Hetero INTRON
SBS Chr9 14943389 G-A Hetero INTERGENIC
SBS Chr10 260971 A-G Hetero INTERGENIC
SBS Chr10 2453586 G-A Hetero INTRON
SBS Chr11 6178597 C-T Hetero INTERGENIC
SBS Chr11 17459569 G-A Homo INTRON

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 225300 225303 3
Deletion Chr1 1130001 1160000 29999 4
Deletion Chr6 3784847 3784859 12
Deletion Chr2 4396696 4396698 2
Deletion Chr3 5599584 5599588 4
Deletion Chr6 7216207 7216226 19
Deletion Chr3 8513589 8513595 6
Deletion Chr2 10072544 10072545 1
Deletion Chr2 12448184 12448186 2
Deletion Chr11 12459798 12459799 1
Deletion Chr11 13067001 13373000 305999 4
Deletion Chr2 15873977 15873978 1
Deletion Chr2 17761070 17761072 2
Deletion Chr12 19437524 19437530 6
Deletion Chr9 19982004 19982009 5
Deletion Chr3 20980450 20980452 2
Deletion Chr11 21234937 21234938 1
Deletion Chr3 26267571 26267573 2

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 6088090 6088093 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 13934950 14192696 OsKitaake03g183500
Inversion Chr3 13934971 14192701 OsKitaake03g183500

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 514784 Chr4 35034812 OsKitaake04g294000
Translocation Chr11 2468315 Chr3 13934966 2
Translocation Chr11 2468586 Chr3 14192700 OsKitaake11g035700
Translocation Chr5 21289850 Chr2 26526722 OsKitaake02g265100
Translocation Chr5 21290246 Chr2 26526728 OsKitaake02g265100
Translocation Chr12 21994996 Chr4 35035582 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	34956669	G-A	Hetero	INTERGENIC
SBS	Chr1	36344274	C-T	Hetero	INTERGENIC
SBS	Chr2	12112160	T-A	Hetero	UTR_5_PRIME
SBS	Chr2	17448507	C-A	Homo	INTRON
SBS	Chr2	32251741	T-A	Homo	INTERGENIC
SBS	Chr3	16773878	C-G	Hetero	INTERGENIC
SBS	Chr3	20353590	G-C	Homo	INTERGENIC
SBS	Chr3	21976513	C-T	Homo	INTERGENIC
SBS	Chr4	5062331	T-C	Hetero	INTERGENIC
SBS	Chr4	13722815	G-A	Hetero	INTERGENIC
SBS	Chr4	15832643	C-T	Homo	INTERGENIC
SBS	Chr4	19279966	C-A	Homo	INTERGENIC
SBS	Chr4	23802187	A-C	Hetero	INTRON
SBS	Chr4	31852290	A-G	Homo	INTRON
SBS	Chr6	2610301	A-G	Homo	INTERGENIC
SBS	Chr6	7530066	G-C	Homo	INTERGENIC
SBS	Chr6	13986115	C-T	Hetero	INTRON
SBS	Chr7	5477592	T-C	Hetero	INTERGENIC
SBS	Chr7	26764395	A-T	Homo	UTR_3_PRIME
SBS	Chr8	13378055	C-G	Hetero	INTRON
SBS	Chr9	10786842	G-A	Hetero	INTRON
SBS	Chr9	14943389	G-A	Hetero	INTERGENIC
SBS	Chr10	260971	A-G	Hetero	INTERGENIC
SBS	Chr10	2453586	G-A	Hetero	INTRON
SBS	Chr11	6178597	C-T	Hetero	INTERGENIC
SBS	Chr11	17459569	G-A	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	225300	225303	3
Deletion	Chr1	1130001	1160000	29999	4
Deletion	Chr6	3784847	3784859	12
Deletion	Chr2	4396696	4396698	2
Deletion	Chr3	5599584	5599588	4
Deletion	Chr6	7216207	7216226	19
Deletion	Chr3	8513589	8513595	6
Deletion	Chr2	10072544	10072545	1
Deletion	Chr2	12448184	12448186	2
Deletion	Chr11	12459798	12459799	1
Deletion	Chr11	13067001	13373000	305999	4
Deletion	Chr2	15873977	15873978	1
Deletion	Chr2	17761070	17761072	2
Deletion	Chr12	19437524	19437530	6
Deletion	Chr9	19982004	19982009	5
Deletion	Chr3	20980450	20980452	2
Deletion	Chr11	21234937	21234938	1
Deletion	Chr3	26267571	26267573	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	13934950	14192696	OsKitaake03g183500
Inversion	Chr3	13934971	14192701	OsKitaake03g183500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes