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Mutant Information

Mutant Name	FN2160-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2160-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 51

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 22803928 G-A Homo INTERGENIC
SBS Chr1 22847092 C-T Hetero INTERGENIC
SBS Chr1 23941726 G-A Hetero INTERGENIC
SBS Chr1 24679924 C-A Hetero INTERGENIC
SBS Chr1 30544372 C-G Hetero INTERGENIC
SBS Chr1 41559335 G-A Hetero INTERGENIC
SBS Chr2 7029774 C-T Homo INTERGENIC
SBS Chr2 11382147 C-G Homo INTERGENIC
SBS Chr2 18694435 C-T Homo SYNONYMOUS_CODING
SBS Chr2 18694436 T-A Homo NON_SYNONYMOUS_CODING OsKitaake02g184000
SBS Chr2 22418939 G-A Hetero UTR_3_PRIME
SBS Chr2 23930633 A-T Hetero INTERGENIC
SBS Chr2 25780374 G-A Hetero INTERGENIC
SBS Chr3 6957856 A-G Hetero INTERGENIC
SBS Chr3 14876846 C-T Hetero INTERGENIC
SBS Chr3 30648979 T-C Hetero SYNONYMOUS_CODING
SBS Chr3 34237982 A-T Hetero INTERGENIC
SBS Chr4 1397905 G-T Hetero INTERGENIC
SBS Chr4 7031936 G-A Hetero INTERGENIC
SBS Chr4 10128530 G-T Hetero INTERGENIC
SBS Chr4 14037187 C-T Hetero INTERGENIC
SBS Chr4 18656724 G-A Hetero INTERGENIC
SBS Chr4 22098069 C-T Hetero INTERGENIC
SBS Chr4 23464878 G-A Hetero INTERGENIC
SBS Chr5 4302509 G-A Hetero INTERGENIC
SBS Chr5 17136425 C-T Homo INTERGENIC
SBS Chr5 18087582 G-A Hetero INTERGENIC
SBS Chr5 22969639 C-T Homo INTERGENIC
SBS Chr6 2182814 T-A Hetero INTERGENIC
SBS Chr6 13246664 C-T Homo INTERGENIC
SBS Chr6 17749784 C-T Homo INTERGENIC
SBS Chr6 21965371 G-A Homo INTERGENIC
SBS Chr6 23833938 T-A Homo INTERGENIC
SBS Chr6 24346345 C-A Homo INTERGENIC
SBS Chr7 16918941 G-A Hetero INTERGENIC
SBS Chr7 20169538 A-G Homo INTERGENIC
SBS Chr7 24692744 T-C Hetero INTERGENIC
SBS Chr7 27195593 G-A Hetero INTERGENIC
SBS Chr7 27981492 G-A Hetero INTERGENIC
SBS Chr8 11667651 C-T Hetero INTERGENIC
SBS Chr8 14423820 G-A Homo INTERGENIC
SBS Chr8 20368098 T-A Hetero INTERGENIC
SBS Chr9 4073654 T-C Hetero INTERGENIC
SBS Chr9 12145809 G-C Homo INTRON
SBS Chr10 3942212 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake10g029900
SBS Chr10 13698649 C-T Hetero INTERGENIC
SBS Chr10 16791826 C-A Homo INTERGENIC
SBS Chr11 14993398 G-A Hetero INTERGENIC
SBS Chr11 18180627 C-A Homo INTERGENIC
SBS Chr11 19091418 G-A Homo INTERGENIC
SBS Chr12 21939669 A-T Homo INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 2108390 2108393 3 OsKitaake03g030300
Deletion Chr5 3032224 3032390 166 OsKitaake05g035600
Deletion Chr9 8413628 8413630 2
Deletion Chr7 9889499 9889500 1
Deletion Chr2 13396090 13396093 3
Deletion Chr10 15393999 15394000 1
Deletion Chr10 19121616 19121625 9
Deletion Chr3 20212360 20212363 3

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 15986072 15986075 2
Insertion Chr6 24012680 24012683 2
Insertion Chr7 25893745 25893748 2
Insertion Chr2 13850924 13850926 1
Insertion Chr4 15771735 15771737 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 19301872 19359696
Inversion Chr12 19301881 19359705
Inversion Chr7 25063733 25341377
Inversion Chr7 25063751 25341386

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 864027 Chr5 20523994 OsKitaake08g011800
Translocation Chr8 864029 Chr5 20523993 OsKitaake08g011800
Translocation Chr6 19051333 Chr1 26270172
Translocation Chr6 19055100 Chr1 26272246

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22803928	G-A	Homo	INTERGENIC
SBS	Chr1	22847092	C-T	Hetero	INTERGENIC
SBS	Chr1	23941726	G-A	Hetero	INTERGENIC
SBS	Chr1	24679924	C-A	Hetero	INTERGENIC
SBS	Chr1	30544372	C-G	Hetero	INTERGENIC
SBS	Chr1	41559335	G-A	Hetero	INTERGENIC
SBS	Chr2	7029774	C-T	Homo	INTERGENIC
SBS	Chr2	11382147	C-G	Homo	INTERGENIC
SBS	Chr2	18694435	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr2	18694436	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g184000
SBS	Chr2	22418939	G-A	Hetero	UTR_3_PRIME
SBS	Chr2	23930633	A-T	Hetero	INTERGENIC
SBS	Chr2	25780374	G-A	Hetero	INTERGENIC
SBS	Chr3	6957856	A-G	Hetero	INTERGENIC
SBS	Chr3	14876846	C-T	Hetero	INTERGENIC
SBS	Chr3	30648979	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr3	34237982	A-T	Hetero	INTERGENIC
SBS	Chr4	1397905	G-T	Hetero	INTERGENIC
SBS	Chr4	7031936	G-A	Hetero	INTERGENIC
SBS	Chr4	10128530	G-T	Hetero	INTERGENIC
SBS	Chr4	14037187	C-T	Hetero	INTERGENIC
SBS	Chr4	18656724	G-A	Hetero	INTERGENIC
SBS	Chr4	22098069	C-T	Hetero	INTERGENIC
SBS	Chr4	23464878	G-A	Hetero	INTERGENIC
SBS	Chr5	4302509	G-A	Hetero	INTERGENIC
SBS	Chr5	17136425	C-T	Homo	INTERGENIC
SBS	Chr5	18087582	G-A	Hetero	INTERGENIC
SBS	Chr5	22969639	C-T	Homo	INTERGENIC
SBS	Chr6	2182814	T-A	Hetero	INTERGENIC
SBS	Chr6	13246664	C-T	Homo	INTERGENIC
SBS	Chr6	17749784	C-T	Homo	INTERGENIC
SBS	Chr6	21965371	G-A	Homo	INTERGENIC
SBS	Chr6	23833938	T-A	Homo	INTERGENIC
SBS	Chr6	24346345	C-A	Homo	INTERGENIC
SBS	Chr7	16918941	G-A	Hetero	INTERGENIC
SBS	Chr7	20169538	A-G	Homo	INTERGENIC
SBS	Chr7	24692744	T-C	Hetero	INTERGENIC
SBS	Chr7	27195593	G-A	Hetero	INTERGENIC
SBS	Chr7	27981492	G-A	Hetero	INTERGENIC
SBS	Chr8	11667651	C-T	Hetero	INTERGENIC
SBS	Chr8	14423820	G-A	Homo	INTERGENIC
SBS	Chr8	20368098	T-A	Hetero	INTERGENIC
SBS	Chr9	4073654	T-C	Hetero	INTERGENIC
SBS	Chr9	12145809	G-C	Homo	INTRON
SBS	Chr10	3942212	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g029900
SBS	Chr10	13698649	C-T	Hetero	INTERGENIC
SBS	Chr10	16791826	C-A	Homo	INTERGENIC
SBS	Chr11	14993398	G-A	Hetero	INTERGENIC
SBS	Chr11	18180627	C-A	Homo	INTERGENIC
SBS	Chr11	19091418	G-A	Homo	INTERGENIC
SBS	Chr12	21939669	A-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	2108390	2108393	3	OsKitaake03g030300
Deletion	Chr5	3032224	3032390	166	OsKitaake05g035600
Deletion	Chr9	8413628	8413630	2
Deletion	Chr7	9889499	9889500	1
Deletion	Chr2	13396090	13396093	3
Deletion	Chr10	15393999	15394000	1
Deletion	Chr10	19121616	19121625	9
Deletion	Chr3	20212360	20212363	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	19301872	19359696
Inversion	Chr12	19301881	19359705
Inversion	Chr7	25063733	25341377
Inversion	Chr7	25063751	25341386

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes