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Mutant Information

Mutant Name	FN2161-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2161-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11925205 C-T Hetero INTRON
SBS Chr1 37362308 C-T Hetero INTERGENIC
SBS Chr2 1548747 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g024200
SBS Chr2 10994632 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g128500
SBS Chr3 1715104 G-T Homo UTR_5_PRIME
SBS Chr3 8407293 T-C Hetero INTERGENIC
SBS Chr3 13578083 G-C Hetero INTERGENIC
SBS Chr3 31206967 T-C Hetero INTERGENIC
SBS Chr4 20028156 T-A Hetero INTRON
SBS Chr4 21003567 T-A Hetero INTERGENIC
SBS Chr4 35116352 T-C Hetero INTERGENIC
SBS Chr5 9378721 C-T Hetero INTERGENIC
SBS Chr5 18607386 G-A Hetero INTERGENIC
SBS Chr5 21563490 G-T Hetero INTERGENIC
SBS Chr6 5893123 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g077500
SBS Chr6 8698735 T-G Hetero INTERGENIC
SBS Chr6 10574283 A-C Hetero UTR_5_PRIME
SBS Chr6 14934315 G-A Homo INTERGENIC
SBS Chr6 14961368 C-G Homo INTERGENIC
SBS Chr6 22668185 G-T Homo INTERGENIC
SBS Chr7 4745928 G-A Homo INTERGENIC
SBS Chr7 14638180 C-T Homo INTERGENIC
SBS Chr7 24749517 C-T Hetero INTERGENIC
SBS Chr9 9443987 C-T Hetero INTERGENIC
SBS Chr9 12328278 G-A Hetero INTERGENIC
SBS Chr9 12640279 T-A Hetero INTERGENIC
SBS Chr10 6840560 G-C Homo INTERGENIC
SBS Chr10 11716580 C-T Hetero INTERGENIC
SBS Chr10 16813093 A-T Hetero INTERGENIC
SBS Chr11 1142465 G-A Hetero INTERGENIC
SBS Chr11 1496004 A-G Hetero INTERGENIC
SBS Chr11 8956936 A-G Homo INTERGENIC
SBS Chr11 18994834 C-A Hetero INTERGENIC
SBS Chr12 1662000 C-T Homo INTRON
SBS Chr12 25571556 A-T Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 3731977 3731980 3 OsKitaake06g051700
Deletion Chr6 4267595 4267597 2
Deletion Chr1 12581794 12581798 4
Deletion Chr12 12958884 12958885 1
Deletion Chr2 14484001 14854000 369999 10
Deletion Chr9 14647933 14647935 2
Deletion Chr2 14859001 14869000 9999
Deletion Chr8 22687001 22734000 46999 2
Deletion Chr8 22921001 23019000 97999 10
Deletion Chr8 23022001 23185000 162999 12
Deletion Chr1 27662730 27662732 2
Deletion Chr1 35725003 35725011 8
Deletion Chr3 37207495 37207496 1
Deletion Chr1 37910414 37910416 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 16968145 16968148 2
Insertion Chr10 13172398 13172401 2
Insertion Chr11 25796822 25796825 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 4639229 4639412

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 8435982 Chr2 14484936 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11925205	C-T	Hetero	INTRON
SBS	Chr1	37362308	C-T	Hetero	INTERGENIC
SBS	Chr2	1548747	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g024200
SBS	Chr2	10994632	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g128500
SBS	Chr3	1715104	G-T	Homo	UTR_5_PRIME
SBS	Chr3	8407293	T-C	Hetero	INTERGENIC
SBS	Chr3	13578083	G-C	Hetero	INTERGENIC
SBS	Chr3	31206967	T-C	Hetero	INTERGENIC
SBS	Chr4	20028156	T-A	Hetero	INTRON
SBS	Chr4	21003567	T-A	Hetero	INTERGENIC
SBS	Chr4	35116352	T-C	Hetero	INTERGENIC
SBS	Chr5	9378721	C-T	Hetero	INTERGENIC
SBS	Chr5	18607386	G-A	Hetero	INTERGENIC
SBS	Chr5	21563490	G-T	Hetero	INTERGENIC
SBS	Chr6	5893123	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g077500
SBS	Chr6	8698735	T-G	Hetero	INTERGENIC
SBS	Chr6	10574283	A-C	Hetero	UTR_5_PRIME
SBS	Chr6	14934315	G-A	Homo	INTERGENIC
SBS	Chr6	14961368	C-G	Homo	INTERGENIC
SBS	Chr6	22668185	G-T	Homo	INTERGENIC
SBS	Chr7	4745928	G-A	Homo	INTERGENIC
SBS	Chr7	14638180	C-T	Homo	INTERGENIC
SBS	Chr7	24749517	C-T	Hetero	INTERGENIC
SBS	Chr9	9443987	C-T	Hetero	INTERGENIC
SBS	Chr9	12328278	G-A	Hetero	INTERGENIC
SBS	Chr9	12640279	T-A	Hetero	INTERGENIC
SBS	Chr10	6840560	G-C	Homo	INTERGENIC
SBS	Chr10	11716580	C-T	Hetero	INTERGENIC
SBS	Chr10	16813093	A-T	Hetero	INTERGENIC
SBS	Chr11	1142465	G-A	Hetero	INTERGENIC
SBS	Chr11	1496004	A-G	Hetero	INTERGENIC
SBS	Chr11	8956936	A-G	Homo	INTERGENIC
SBS	Chr11	18994834	C-A	Hetero	INTERGENIC
SBS	Chr12	1662000	C-T	Homo	INTRON
SBS	Chr12	25571556	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	3731977	3731980	3	OsKitaake06g051700
Deletion	Chr6	4267595	4267597	2
Deletion	Chr1	12581794	12581798	4
Deletion	Chr12	12958884	12958885	1
Deletion	Chr2	14484001	14854000	369999	10
Deletion	Chr9	14647933	14647935	2
Deletion	Chr2	14859001	14869000	9999
Deletion	Chr8	22687001	22734000	46999	2
Deletion	Chr8	22921001	23019000	97999	10
Deletion	Chr8	23022001	23185000	162999	12
Deletion	Chr1	27662730	27662732	2
Deletion	Chr1	35725003	35725011	8
Deletion	Chr3	37207495	37207496	1
Deletion	Chr1	37910414	37910416	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	4639229	4639412

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes