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Mutant Information

Mutant Name	FN2166-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2166-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 55

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7144999 T-A Hetero INTERGENIC
SBS Chr1 23582045 A-T Homo INTERGENIC
SBS Chr1 25283936 G-A Hetero INTRON
SBS Chr1 26946573 A-G Hetero INTRON
SBS Chr1 31101228 T-C Homo INTERGENIC
SBS Chr1 39128554 T-C Hetero INTERGENIC
SBS Chr1 43012611 T-C Hetero INTERGENIC
SBS Chr2 438346 G-T Hetero INTRON
SBS Chr2 438347 A-T Hetero INTRON
SBS Chr2 2211089 G-A Hetero INTRON
SBS Chr2 12710811 C-T Homo INTERGENIC
SBS Chr2 34529731 T-G Homo NON_SYNONYMOUS_CODING OsKitaake02g358950
SBS Chr3 1646891 A-T Hetero INTRON
SBS Chr3 8290497 G-A Hetero INTRON
SBS Chr3 11976679 G-A Hetero INTERGENIC
SBS Chr3 21877970 G-A Hetero INTERGENIC
SBS Chr3 24933715 C-T Hetero INTERGENIC
SBS Chr3 29912822 T-C Hetero INTRON
SBS Chr3 30151628 G-C Hetero INTERGENIC
SBS Chr3 32421484 T-A Hetero INTERGENIC
SBS Chr4 1276595 T-C Hetero INTERGENIC
SBS Chr4 5356473 A-T Hetero INTRON
SBS Chr4 16079948 A-G Homo INTERGENIC
SBS Chr4 26358619 C-T Hetero INTERGENIC
SBS Chr4 35636985 C-T Hetero UTR_5_PRIME
SBS Chr4 36673436 C-T Hetero INTERGENIC
SBS Chr5 10247723 G-A Hetero INTERGENIC
SBS Chr5 11842362 G-T Hetero INTERGENIC
SBS Chr5 14242979 C-A Hetero INTRON
SBS Chr5 15364277 T-A Hetero INTRON
SBS Chr5 17776067 G-A Hetero INTERGENIC
SBS Chr5 21598192 T-C Hetero INTERGENIC
SBS Chr6 1180995 A-C Homo NON_SYNONYMOUS_CODING OsKitaake06g013800
SBS Chr6 1180996 T-A Homo NON_SYNONYMOUS_CODING OsKitaake06g013800
SBS Chr6 2922986 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake06g039900
SBS Chr6 26199471 A-G Homo INTERGENIC
SBS Chr7 3710506 G-A Hetero INTERGENIC
SBS Chr7 12718501 C-A Hetero INTERGENIC
SBS Chr8 5567174 C-G Hetero INTERGENIC
SBS Chr8 14770370 G-A Hetero INTERGENIC
SBS Chr8 18831348 A-T Hetero INTERGENIC
SBS Chr8 19435302 G-A Hetero INTERGENIC
SBS Chr8 22563447 T-A Hetero INTERGENIC
SBS Chr8 22815416 A-T Hetero INTERGENIC
SBS Chr8 22815418 G-T Hetero INTERGENIC
SBS Chr9 10315645 G-A Hetero INTERGENIC
SBS Chr9 11274515 G-A Homo INTERGENIC
SBS Chr10 9448811 T-C Hetero INTERGENIC
SBS Chr11 2029123 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g029400
SBS Chr11 2029127 G-C Hetero SYNONYMOUS_CODING
SBS Chr11 6595607 T-A Homo INTERGENIC
SBS Chr11 19506588 A-T Homo INTERGENIC
SBS Chr11 26308497 C-T Hetero INTERGENIC
SBS Chr12 6201757 T-C Hetero INTERGENIC
SBS Chr12 22882803 C-T Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 1453001 1807000 353999 14
Deletion Chr11 7366001 7444000 77999 5
Deletion Chr12 8936016 8936018 2
Deletion Chr9 10817940 10817941 1
Deletion Chr9 10901866 10901868 2
Deletion Chr6 12687148 12687152 4 OsKitaake06g135500
Deletion Chr2 12704758 12704765 7
Deletion Chr6 24115423 24115425 2 OsKitaake06g213700
Deletion Chr11 24342192 24342230 38
Deletion Chr1 24617400 24617401 1
Deletion Chr7 25986221 25986222 1 OsKitaake07g237800

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 5588785 5588788 2
Insertion Chr7 6246599 6246603 3
Insertion Chr2 13854529 13854531 1
Insertion Chr5 15424490 15424492 1 OsKitaake05g118300

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 15727008 15860886 OsKitaake08g122300
Inversion Chr8 15727023 15860886 OsKitaake08g122300
Inversion Chr6 26129612 26197383 OsKitaake06g234000
Inversion Chr6 26129622 26197387 OsKitaake06g234000
Inversion Chr1 36303750 36675244 OsKitaake01g389800

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 12900826 Chr4 5114033
Translocation Chr8 12911377 Chr4 5114019 OsKitaake08g108900
Translocation Chr10 19621185 Chr4 35467984
Translocation Chr10 19621193 Chr4 35460893

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7144999	T-A	Hetero	INTERGENIC
SBS	Chr1	23582045	A-T	Homo	INTERGENIC
SBS	Chr1	25283936	G-A	Hetero	INTRON
SBS	Chr1	26946573	A-G	Hetero	INTRON
SBS	Chr1	31101228	T-C	Homo	INTERGENIC
SBS	Chr1	39128554	T-C	Hetero	INTERGENIC
SBS	Chr1	43012611	T-C	Hetero	INTERGENIC
SBS	Chr2	438346	G-T	Hetero	INTRON
SBS	Chr2	438347	A-T	Hetero	INTRON
SBS	Chr2	2211089	G-A	Hetero	INTRON
SBS	Chr2	12710811	C-T	Homo	INTERGENIC
SBS	Chr2	34529731	T-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g358950
SBS	Chr3	1646891	A-T	Hetero	INTRON
SBS	Chr3	8290497	G-A	Hetero	INTRON
SBS	Chr3	11976679	G-A	Hetero	INTERGENIC
SBS	Chr3	21877970	G-A	Hetero	INTERGENIC
SBS	Chr3	24933715	C-T	Hetero	INTERGENIC
SBS	Chr3	29912822	T-C	Hetero	INTRON
SBS	Chr3	30151628	G-C	Hetero	INTERGENIC
SBS	Chr3	32421484	T-A	Hetero	INTERGENIC
SBS	Chr4	1276595	T-C	Hetero	INTERGENIC
SBS	Chr4	5356473	A-T	Hetero	INTRON
SBS	Chr4	16079948	A-G	Homo	INTERGENIC
SBS	Chr4	26358619	C-T	Hetero	INTERGENIC
SBS	Chr4	35636985	C-T	Hetero	UTR_5_PRIME
SBS	Chr4	36673436	C-T	Hetero	INTERGENIC
SBS	Chr5	10247723	G-A	Hetero	INTERGENIC
SBS	Chr5	11842362	G-T	Hetero	INTERGENIC
SBS	Chr5	14242979	C-A	Hetero	INTRON
SBS	Chr5	15364277	T-A	Hetero	INTRON
SBS	Chr5	17776067	G-A	Hetero	INTERGENIC
SBS	Chr5	21598192	T-C	Hetero	INTERGENIC
SBS	Chr6	1180995	A-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g013800
SBS	Chr6	1180996	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g013800
SBS	Chr6	2922986	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g039900
SBS	Chr6	26199471	A-G	Homo	INTERGENIC
SBS	Chr7	3710506	G-A	Hetero	INTERGENIC
SBS	Chr7	12718501	C-A	Hetero	INTERGENIC
SBS	Chr8	5567174	C-G	Hetero	INTERGENIC
SBS	Chr8	14770370	G-A	Hetero	INTERGENIC
SBS	Chr8	18831348	A-T	Hetero	INTERGENIC
SBS	Chr8	19435302	G-A	Hetero	INTERGENIC
SBS	Chr8	22563447	T-A	Hetero	INTERGENIC
SBS	Chr8	22815416	A-T	Hetero	INTERGENIC
SBS	Chr8	22815418	G-T	Hetero	INTERGENIC
SBS	Chr9	10315645	G-A	Hetero	INTERGENIC
SBS	Chr9	11274515	G-A	Homo	INTERGENIC
SBS	Chr10	9448811	T-C	Hetero	INTERGENIC
SBS	Chr11	2029123	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g029400
SBS	Chr11	2029127	G-C	Hetero	SYNONYMOUS_CODING
SBS	Chr11	6595607	T-A	Homo	INTERGENIC
SBS	Chr11	19506588	A-T	Homo	INTERGENIC
SBS	Chr11	26308497	C-T	Hetero	INTERGENIC
SBS	Chr12	6201757	T-C	Hetero	INTERGENIC
SBS	Chr12	22882803	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	1453001	1807000	353999	14
Deletion	Chr11	7366001	7444000	77999	5
Deletion	Chr12	8936016	8936018	2
Deletion	Chr9	10817940	10817941	1
Deletion	Chr9	10901866	10901868	2
Deletion	Chr6	12687148	12687152	4	OsKitaake06g135500
Deletion	Chr2	12704758	12704765	7
Deletion	Chr6	24115423	24115425	2	OsKitaake06g213700
Deletion	Chr11	24342192	24342230	38
Deletion	Chr1	24617400	24617401	1
Deletion	Chr7	25986221	25986222	1	OsKitaake07g237800

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	15727008	15860886	OsKitaake08g122300
Inversion	Chr8	15727023	15860886	OsKitaake08g122300
Inversion	Chr6	26129612	26197383	OsKitaake06g234000
Inversion	Chr6	26129622	26197387	OsKitaake06g234000
Inversion	Chr1	36303750	36675244	OsKitaake01g389800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes