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Mutant Information

Mutant Name	FN2171-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2171-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 25971374 G-A Hetero INTERGENIC
SBS Chr2 17016419 A-G Hetero INTERGENIC
SBS Chr2 20956355 G-A Hetero INTRON
SBS Chr2 23071714 C-A Hetero INTERGENIC
SBS Chr2 24361842 C-A Hetero INTRON
SBS Chr2 24500360 C-T Hetero INTERGENIC
SBS Chr2 26112548 A-C Hetero SYNONYMOUS_CODING
SBS Chr2 27411667 C-T Hetero INTERGENIC
SBS Chr2 33490617 A-G Hetero INTRON
SBS Chr3 2925674 A-C Hetero INTERGENIC
SBS Chr3 11633220 G-A Hetero INTERGENIC
SBS Chr3 30877438 C-T Hetero INTERGENIC
SBS Chr4 10185880 T-C Homo INTERGENIC
SBS Chr5 9121040 T-C Homo INTERGENIC
SBS Chr5 19185969 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake05g150200
SBS Chr6 21769912 G-A Hetero INTERGENIC
SBS Chr7 14735252 C-T Homo INTERGENIC
SBS Chr7 17141304 C-T Homo INTERGENIC
SBS Chr8 3488504 G-T Homo INTERGENIC
SBS Chr8 17382382 A-C Hetero INTERGENIC
SBS Chr8 25856084 G-A Hetero INTERGENIC
SBS Chr9 15502796 G-A Homo INTERGENIC
SBS Chr9 20264255 A-T Hetero INTERGENIC
SBS Chr9 21198959 C-T Hetero INTERGENIC
SBS Chr10 5402034 T-C Homo INTERGENIC
SBS Chr10 20904969 C-T Homo INTERGENIC
SBS Chr10 20904970 G-T Homo INTERGENIC
SBS Chr11 29546180 C-T Hetero INTERGENIC
SBS Chr12 8117009 G-T Hetero INTERGENIC
SBS Chr12 8187849 A-G Hetero INTERGENIC
SBS Chr12 9549747 C-G Hetero INTERGENIC
SBS Chr12 12975598 T-C Hetero INTERGENIC
SBS Chr12 24089197 C-T Homo INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 180955 180957 2
Deletion Chr3 1686650 1686652 2
Deletion Chr4 7337001 7429000 91999 4
Deletion Chr8 7408408 7408411 3
Deletion Chr7 10431484 10431486 2
Deletion Chr10 14349154 14349159 5
Deletion Chr1 14752768 14752770 2
Deletion Chr9 15176521 15176528 7
Deletion Chr9 16963808 16963810 2
Deletion Chr9 17068290 17068291 1
Deletion Chr10 18686981 18686983 2
Deletion Chr6 25796662 25796664 2
Deletion Chr2 26248337 26248342 5 OsKitaake02g260800
Deletion Chr4 27157744 27157746 2
Deletion Chr3 29689845 29689852 7
Deletion Chr4 36805150 36805152 2
Deletion Chr1 39673566 39673569 3

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 16036785 16036788 2
Insertion Chr5 4119283 4119286 2
Insertion Chr5 9944344 9944346 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 4878248 4878553 OsKitaake06g066200
Inversion Chr4 29138597 29280523 OsKitaake04g222500
Inversion Chr1 33801001 33994561 2
Inversion Chr1 33801015 33994577 2

Translocations: 7

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 2656394 Chr3 31070136 2
Translocation Chr12 2656397 Chr4 7422885 OsKitaake12g039100
Translocation Chr6 4878250 Chr3 9003607 OsKitaake06g066200
Translocation Chr6 4878258 Chr3 9003607 OsKitaake06g066200
Translocation Chr6 4880814 Chr3 9006028
Translocation Chr4 7337733 Chr3 31070552 OsKitaake03g326100
Translocation Chr11 24896627 Chr5 25117995 OsKitaake05g218456

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	25971374	G-A	Hetero	INTERGENIC
SBS	Chr2	17016419	A-G	Hetero	INTERGENIC
SBS	Chr2	20956355	G-A	Hetero	INTRON
SBS	Chr2	23071714	C-A	Hetero	INTERGENIC
SBS	Chr2	24361842	C-A	Hetero	INTRON
SBS	Chr2	24500360	C-T	Hetero	INTERGENIC
SBS	Chr2	26112548	A-C	Hetero	SYNONYMOUS_CODING
SBS	Chr2	27411667	C-T	Hetero	INTERGENIC
SBS	Chr2	33490617	A-G	Hetero	INTRON
SBS	Chr3	2925674	A-C	Hetero	INTERGENIC
SBS	Chr3	11633220	G-A	Hetero	INTERGENIC
SBS	Chr3	30877438	C-T	Hetero	INTERGENIC
SBS	Chr4	10185880	T-C	Homo	INTERGENIC
SBS	Chr5	9121040	T-C	Homo	INTERGENIC
SBS	Chr5	19185969	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g150200
SBS	Chr6	21769912	G-A	Hetero	INTERGENIC
SBS	Chr7	14735252	C-T	Homo	INTERGENIC
SBS	Chr7	17141304	C-T	Homo	INTERGENIC
SBS	Chr8	3488504	G-T	Homo	INTERGENIC
SBS	Chr8	17382382	A-C	Hetero	INTERGENIC
SBS	Chr8	25856084	G-A	Hetero	INTERGENIC
SBS	Chr9	15502796	G-A	Homo	INTERGENIC
SBS	Chr9	20264255	A-T	Hetero	INTERGENIC
SBS	Chr9	21198959	C-T	Hetero	INTERGENIC
SBS	Chr10	5402034	T-C	Homo	INTERGENIC
SBS	Chr10	20904969	C-T	Homo	INTERGENIC
SBS	Chr10	20904970	G-T	Homo	INTERGENIC
SBS	Chr11	29546180	C-T	Hetero	INTERGENIC
SBS	Chr12	8117009	G-T	Hetero	INTERGENIC
SBS	Chr12	8187849	A-G	Hetero	INTERGENIC
SBS	Chr12	9549747	C-G	Hetero	INTERGENIC
SBS	Chr12	12975598	T-C	Hetero	INTERGENIC
SBS	Chr12	24089197	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	180955	180957	2
Deletion	Chr3	1686650	1686652	2
Deletion	Chr4	7337001	7429000	91999	4
Deletion	Chr8	7408408	7408411	3
Deletion	Chr7	10431484	10431486	2
Deletion	Chr10	14349154	14349159	5
Deletion	Chr1	14752768	14752770	2
Deletion	Chr9	15176521	15176528	7
Deletion	Chr9	16963808	16963810	2
Deletion	Chr9	17068290	17068291	1
Deletion	Chr10	18686981	18686983	2
Deletion	Chr6	25796662	25796664	2
Deletion	Chr2	26248337	26248342	5	OsKitaake02g260800
Deletion	Chr4	27157744	27157746	2
Deletion	Chr3	29689845	29689852	7
Deletion	Chr4	36805150	36805152	2
Deletion	Chr1	39673566	39673569	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	4878248	4878553	OsKitaake06g066200
Inversion	Chr4	29138597	29280523	OsKitaake04g222500
Inversion	Chr1	33801001	33994561	2
Inversion	Chr1	33801015	33994577	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes