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Mutant Information

Mutant Name	FN2180-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2180-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 468963 T-G Hetero INTERGENIC
SBS Chr1 9233027 A-G Hetero INTERGENIC
SBS Chr1 19274717 A-G Hetero INTERGENIC
SBS Chr1 21634141 A-T Homo INTERGENIC
SBS Chr1 30417512 C-T Hetero INTERGENIC
SBS Chr1 33478071 A-G Hetero INTERGENIC
SBS Chr1 41376346 T-A Homo INTERGENIC
SBS Chr1 41376347 C-A Homo INTERGENIC
SBS Chr2 2238232 T-A Homo INTERGENIC
SBS Chr2 27275250 C-T Hetero INTERGENIC
SBS Chr2 27275251 C-T Hetero INTERGENIC
SBS Chr3 5206663 C-T Hetero START_GAINED
SBS Chr3 10019952 G-A Homo INTERGENIC
SBS Chr3 13459357 A-G Hetero INTERGENIC
SBS Chr3 16102271 C-T Hetero INTERGENIC
SBS Chr3 17914360 T-A Hetero INTERGENIC
SBS Chr3 18689682 C-T Hetero SYNONYMOUS_CODING
SBS Chr4 8586246 C-T Hetero INTERGENIC
SBS Chr4 10264753 T-C Hetero INTERGENIC
SBS Chr4 21866916 A-G Homo INTERGENIC
SBS Chr4 32816283 C-T Hetero INTRON
SBS Chr5 10871709 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake05g093400
SBS Chr5 19526581 G-A Homo INTERGENIC
SBS Chr6 11128640 G-A Hetero INTERGENIC
SBS Chr6 16917634 C-T Hetero INTERGENIC
SBS Chr7 5605709 G-A Hetero INTERGENIC
SBS Chr7 5625915 A-G Hetero INTERGENIC
SBS Chr7 6811392 G-T Hetero INTERGENIC
SBS Chr7 7756952 C-T Hetero INTERGENIC
SBS Chr8 18005533 C-T Hetero INTERGENIC
SBS Chr8 19214367 G-A Hetero INTERGENIC
SBS Chr8 26211629 A-T Hetero INTERGENIC
SBS Chr9 8890489 A-T Hetero INTERGENIC
SBS Chr9 11908139 T-G Hetero INTERGENIC
SBS Chr9 15024041 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake09g103800
SBS Chr10 11545944 T-A Homo SYNONYMOUS_CODING
SBS Chr10 12792707 C-T Homo INTERGENIC
SBS Chr11 21179133 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake11g167700
SBS Chr11 25074646 T-C Hetero INTERGENIC
SBS Chr12 15238112 T-C Homo INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 885291 885295 4
Deletion Chr9 1968576 1968583 7
Deletion Chr1 2223121 2223128 7
Deletion Chr4 2418770 2418772 2
Deletion Chr5 8986001 9512000 525999 30
Deletion Chr12 12196948 12196953 5
Deletion Chr5 13235653 13235663 10
Deletion Chr2 24286657 24286662 5
Deletion Chr5 28431190 28431197 7
Deletion Chr4 35685001 35830000 144999 31
Deletion Chr1 37943803 37943807 4

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 8916647 8916650 2
Insertion Chr5 10666261 10666264 2
Insertion Chr6 26463279 26463281 1
Insertion Chr6 26744194 26744197 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 6301112 Chr1 12450165 OsKitaake01g150200
Translocation Chr6 6301122 Chr1 12491151

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	468963	T-G	Hetero	INTERGENIC
SBS	Chr1	9233027	A-G	Hetero	INTERGENIC
SBS	Chr1	19274717	A-G	Hetero	INTERGENIC
SBS	Chr1	21634141	A-T	Homo	INTERGENIC
SBS	Chr1	30417512	C-T	Hetero	INTERGENIC
SBS	Chr1	33478071	A-G	Hetero	INTERGENIC
SBS	Chr1	41376346	T-A	Homo	INTERGENIC
SBS	Chr1	41376347	C-A	Homo	INTERGENIC
SBS	Chr2	2238232	T-A	Homo	INTERGENIC
SBS	Chr2	27275250	C-T	Hetero	INTERGENIC
SBS	Chr2	27275251	C-T	Hetero	INTERGENIC
SBS	Chr3	5206663	C-T	Hetero	START_GAINED
SBS	Chr3	10019952	G-A	Homo	INTERGENIC
SBS	Chr3	13459357	A-G	Hetero	INTERGENIC
SBS	Chr3	16102271	C-T	Hetero	INTERGENIC
SBS	Chr3	17914360	T-A	Hetero	INTERGENIC
SBS	Chr3	18689682	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr4	8586246	C-T	Hetero	INTERGENIC
SBS	Chr4	10264753	T-C	Hetero	INTERGENIC
SBS	Chr4	21866916	A-G	Homo	INTERGENIC
SBS	Chr4	32816283	C-T	Hetero	INTRON
SBS	Chr5	10871709	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g093400
SBS	Chr5	19526581	G-A	Homo	INTERGENIC
SBS	Chr6	11128640	G-A	Hetero	INTERGENIC
SBS	Chr6	16917634	C-T	Hetero	INTERGENIC
SBS	Chr7	5605709	G-A	Hetero	INTERGENIC
SBS	Chr7	5625915	A-G	Hetero	INTERGENIC
SBS	Chr7	6811392	G-T	Hetero	INTERGENIC
SBS	Chr7	7756952	C-T	Hetero	INTERGENIC
SBS	Chr8	18005533	C-T	Hetero	INTERGENIC
SBS	Chr8	19214367	G-A	Hetero	INTERGENIC
SBS	Chr8	26211629	A-T	Hetero	INTERGENIC
SBS	Chr9	8890489	A-T	Hetero	INTERGENIC
SBS	Chr9	11908139	T-G	Hetero	INTERGENIC
SBS	Chr9	15024041	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g103800
SBS	Chr10	11545944	T-A	Homo	SYNONYMOUS_CODING
SBS	Chr10	12792707	C-T	Homo	INTERGENIC
SBS	Chr11	21179133	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g167700
SBS	Chr11	25074646	T-C	Hetero	INTERGENIC
SBS	Chr12	15238112	T-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	885291	885295	4
Deletion	Chr9	1968576	1968583	7
Deletion	Chr1	2223121	2223128	7
Deletion	Chr4	2418770	2418772	2
Deletion	Chr5	8986001	9512000	525999	30
Deletion	Chr12	12196948	12196953	5
Deletion	Chr5	13235653	13235663	10
Deletion	Chr2	24286657	24286662	5
Deletion	Chr5	28431190	28431197	7
Deletion	Chr4	35685001	35830000	144999	31
Deletion	Chr1	37943803	37943807	4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	6301112	Chr1	12450165	OsKitaake01g150200
Translocation	Chr6	6301122	Chr1	12491151

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes