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Mutant Information

Mutant Name	FN2181-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2181-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8857159 A-T Hetero INTRON
SBS Chr1 30660461 G-T Homo INTERGENIC
SBS Chr2 12371840 G-A Hetero INTERGENIC
SBS Chr2 30909439 A-C Homo INTRON
SBS Chr2 30928719 C-T Homo INTERGENIC
SBS Chr3 4953014 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g071400
SBS Chr3 6393880 T-A Hetero INTRON
SBS Chr3 28508760 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g295400
SBS Chr3 28508761 C-T Hetero SYNONYMOUS_CODING
SBS Chr3 30522397 C-A Hetero INTERGENIC
SBS Chr3 33577139 G-T Hetero INTERGENIC
SBS Chr3 34210960 G-A Hetero INTERGENIC
SBS Chr4 8697148 T-G Hetero INTRON
SBS Chr4 11573292 T-C Hetero INTERGENIC
SBS Chr4 18030573 A-T Hetero INTERGENIC
SBS Chr4 25540236 T-C Homo INTERGENIC
SBS Chr4 27089267 C-T Homo INTERGENIC
SBS Chr5 7480827 G-A Homo INTERGENIC
SBS Chr5 16923520 T-A Homo INTERGENIC
SBS Chr5 22198929 T-C Homo INTRON
SBS Chr5 23266268 T-C Hetero INTERGENIC
SBS Chr6 274738 C-T Hetero INTERGENIC
SBS Chr6 4026585 T-A Hetero INTERGENIC
SBS Chr7 19586216 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g159100
SBS Chr7 27156629 C-A Homo INTRON
SBS Chr8 6000344 G-T Hetero INTERGENIC
SBS Chr8 13482857 G-T Hetero INTERGENIC
SBS Chr8 19372860 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g142400
SBS Chr9 1677594 G-A Hetero INTERGENIC
SBS Chr9 1960712 C-G Hetero INTERGENIC
SBS Chr9 3422986 G-A Hetero INTERGENIC
SBS Chr9 5071849 G-A Hetero INTERGENIC
SBS Chr9 10089655 G-A Hetero INTERGENIC
SBS Chr10 4891152 G-T Hetero INTERGENIC
SBS Chr10 23674169 C-A Hetero INTERGENIC
SBS Chr11 4831634 A-C Hetero INTERGENIC
SBS Chr11 10776589 C-G Hetero INTERGENIC
SBS Chr11 29600073 G-A Hetero INTERGENIC
SBS Chr12 2981540 T-A Hetero INTERGENIC
SBS Chr12 19533959 A-G Hetero INTERGENIC
SBS Chr12 19878516 T-A Homo INTERGENIC
SBS Chr12 21707954 C-T Hetero INTERGENIC
SBS Chr12 26018233 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g215400

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 2059395 2059400 5
Deletion Chr12 2672501 2672505 4
Deletion Chr6 3967977 3967980 3
Deletion Chr1 5051313 5051316 3 OsKitaake01g066400
Deletion Chr10 8964140 8964143 3
Deletion Chr2 11563664 11563668 4 OsKitaake02g133500
Deletion Chr1 14609459 14609460 1
Deletion Chr12 22493002 22493004 2
Deletion Chr1 23999367 23999371 4
Deletion Chr2 26941489 26941494 5
Deletion Chr8 27541986 27541988 2
Deletion Chr1 29159380 29159386 6

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 10699739 10699742 2
Insertion Chr5 821856 821859 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 12669520 12702480 OsKitaake11g113900
Inversion Chr6 25110631 25279546
Inversion Chr6 25110632 25279548

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8857159	A-T	Hetero	INTRON
SBS	Chr1	30660461	G-T	Homo	INTERGENIC
SBS	Chr2	12371840	G-A	Hetero	INTERGENIC
SBS	Chr2	30909439	A-C	Homo	INTRON
SBS	Chr2	30928719	C-T	Homo	INTERGENIC
SBS	Chr3	4953014	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g071400
SBS	Chr3	6393880	T-A	Hetero	INTRON
SBS	Chr3	28508760	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g295400
SBS	Chr3	28508761	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr3	30522397	C-A	Hetero	INTERGENIC
SBS	Chr3	33577139	G-T	Hetero	INTERGENIC
SBS	Chr3	34210960	G-A	Hetero	INTERGENIC
SBS	Chr4	8697148	T-G	Hetero	INTRON
SBS	Chr4	11573292	T-C	Hetero	INTERGENIC
SBS	Chr4	18030573	A-T	Hetero	INTERGENIC
SBS	Chr4	25540236	T-C	Homo	INTERGENIC
SBS	Chr4	27089267	C-T	Homo	INTERGENIC
SBS	Chr5	7480827	G-A	Homo	INTERGENIC
SBS	Chr5	16923520	T-A	Homo	INTERGENIC
SBS	Chr5	22198929	T-C	Homo	INTRON
SBS	Chr5	23266268	T-C	Hetero	INTERGENIC
SBS	Chr6	274738	C-T	Hetero	INTERGENIC
SBS	Chr6	4026585	T-A	Hetero	INTERGENIC
SBS	Chr7	19586216	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g159100
SBS	Chr7	27156629	C-A	Homo	INTRON
SBS	Chr8	6000344	G-T	Hetero	INTERGENIC
SBS	Chr8	13482857	G-T	Hetero	INTERGENIC
SBS	Chr8	19372860	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g142400
SBS	Chr9	1677594	G-A	Hetero	INTERGENIC
SBS	Chr9	1960712	C-G	Hetero	INTERGENIC
SBS	Chr9	3422986	G-A	Hetero	INTERGENIC
SBS	Chr9	5071849	G-A	Hetero	INTERGENIC
SBS	Chr9	10089655	G-A	Hetero	INTERGENIC
SBS	Chr10	4891152	G-T	Hetero	INTERGENIC
SBS	Chr10	23674169	C-A	Hetero	INTERGENIC
SBS	Chr11	4831634	A-C	Hetero	INTERGENIC
SBS	Chr11	10776589	C-G	Hetero	INTERGENIC
SBS	Chr11	29600073	G-A	Hetero	INTERGENIC
SBS	Chr12	2981540	T-A	Hetero	INTERGENIC
SBS	Chr12	19533959	A-G	Hetero	INTERGENIC
SBS	Chr12	19878516	T-A	Homo	INTERGENIC
SBS	Chr12	21707954	C-T	Hetero	INTERGENIC
SBS	Chr12	26018233	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g215400

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	2059395	2059400	5
Deletion	Chr12	2672501	2672505	4
Deletion	Chr6	3967977	3967980	3
Deletion	Chr1	5051313	5051316	3	OsKitaake01g066400
Deletion	Chr10	8964140	8964143	3
Deletion	Chr2	11563664	11563668	4	OsKitaake02g133500
Deletion	Chr1	14609459	14609460	1
Deletion	Chr12	22493002	22493004	2
Deletion	Chr1	23999367	23999371	4
Deletion	Chr2	26941489	26941494	5
Deletion	Chr8	27541986	27541988	2
Deletion	Chr1	29159380	29159386	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	12669520	12702480	OsKitaake11g113900
Inversion	Chr6	25110631	25279546
Inversion	Chr6	25110632	25279548

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes