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| Mutant Information |
|---|
| Mutant Name | FN2182-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2182-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
|
| Variant Information |
|---|
Single base substitutions: 24
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr2 | 2354028 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 2354029 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 6739121 | G-T | Hetero | UTR_3_PRIME | |
| SBS | Chr2 | 24692245 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 25113934 | A-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 6764708 | C-G | Hetero | INTRON | |
| SBS | Chr3 | 15082609 | C-T | Hetero | UTR_5_PRIME | |
| SBS | Chr3 | 23189401 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 30541732 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 17515310 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 22139717 | C-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 23041991 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 2936432 | A-T | Homo | INTERGENIC | |
| SBS | Chr7 | 12548584 | C-A | Homo | INTERGENIC | |
| SBS | Chr7 | 27191185 | C-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 2763183 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 2763184 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 26242204 | C-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake08g209600 |
| SBS | Chr8 | 26675021 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 7218006 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 11243569 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 12290773 | C-A | Homo | INTERGENIC | |
| SBS | Chr12 | 16058260 | A-T | Homo | INTERGENIC | |
| SBS | Chr12 | 17921770 | T-A | Hetero | INTERGENIC |
Deletions: 16
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 7256772 | 7256774 | 2 | |
| Deletion | Chr5 | 8274288 | 8274290 | 2 | |
| Deletion | Chr9 | 9754409 | 9754422 | 13 | |
| Deletion | Chr10 | 10371304 | 10371309 | 5 | |
| Deletion | Chr2 | 10877183 | 10877184 | 1 | |
| Deletion | Chr10 | 14896885 | 14896886 | 1 | OsKitaake10g092801 |
| Deletion | Chr7 | 17197308 | 17197311 | 3 | |
| Deletion | Chr4 | 17430515 | 17430531 | 16 | |
| Deletion | Chr11 | 18070001 | 18588000 | 517999 | 26 |
| Deletion | Chr10 | 18249422 | 18249423 | 1 | |
| Deletion | Chr11 | 18977240 | 18977257 | 17 | |
| Deletion | Chr10 | 20498101 | 20498115 | 14 | |
| Deletion | Chr4 | 21374001 | 21492000 | 117999 | 19 |
| Deletion | Chr5 | 24041056 | 24041061 | 5 | |
| Deletion | Chr7 | 24985720 | 24985721 | 1 | |
| Deletion | Chr4 | 26575071 | 26575079 | 8 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr7 | 17731886 | 17731889 | 2 | |
| Insertion | Chr9 | 21486436 | 21486439 | 2 | |
| Insertion | Chr11 | 13627464 | 13627467 | 2 | |
| Insertion | Chr8 | 13474384 | 13474391 | 6 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr4 | 20654049 | 21007708 | OsKitaake04g115000 |
| Inversion | Chr4 | 20654074 | 21007732 | OsKitaake04g115000 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr3 | 36201589 | Chr1 | 42118820 | OsKitaake01g462600 |
| Translocation | Chr3 | 36202165 | Chr1 | 42118800 | OsKitaake01g462600 |