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Mutant Information

Mutant Name	FN2183-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2183-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Very Low (Below 24%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8125979 C-G Hetero INTRON
SBS Chr1 9147346 A-C Hetero INTERGENIC
SBS Chr1 13409159 G-C Homo INTERGENIC
SBS Chr1 16230736 T-C Hetero INTERGENIC
SBS Chr1 16834433 A-C Hetero INTERGENIC
SBS Chr1 26296439 G-A Hetero INTERGENIC
SBS Chr1 44269096 C-G Hetero INTERGENIC
SBS Chr2 78941 T-C Homo UTR_3_PRIME
SBS Chr2 1311666 A-T Hetero UTR_3_PRIME
SBS Chr2 2461639 C-T Hetero INTERGENIC
SBS Chr2 4864804 T-A Hetero INTERGENIC
SBS Chr2 6961622 C-G Hetero INTERGENIC
SBS Chr2 7747389 C-T Hetero INTERGENIC
SBS Chr2 12470260 T-C Hetero INTERGENIC
SBS Chr2 31126006 G-T Homo INTRON
SBS Chr2 33046529 G-A Homo INTERGENIC
SBS Chr3 19899728 C-T Hetero INTERGENIC
SBS Chr3 35293306 G-A Hetero INTRON
SBS Chr3 35349745 C-T Hetero INTERGENIC
SBS Chr4 16333773 G-A Hetero INTERGENIC
SBS Chr5 14528 G-C Hetero INTERGENIC
SBS Chr5 7832469 C-T Hetero INTERGENIC
SBS Chr5 20504852 C-T Hetero INTERGENIC
SBS Chr5 25015422 C-A Hetero INTERGENIC
SBS Chr6 12284658 A-T Hetero INTERGENIC
SBS Chr6 18223693 C-T Hetero INTERGENIC
SBS Chr7 16572622 G-A Hetero INTERGENIC
SBS Chr7 20523758 A-C Hetero INTERGENIC
SBS Chr8 639513 C-T Hetero SYNONYMOUS_CODING
SBS Chr8 11002668 C-T Hetero INTERGENIC
SBS Chr8 12980981 G-A Hetero INTERGENIC
SBS Chr9 11310234 A-G Hetero INTERGENIC
SBS Chr9 15454383 G-A Hetero INTRON
SBS Chr10 7300885 C-A Homo INTERGENIC
SBS Chr10 8727865 G-T Hetero INTERGENIC
SBS Chr10 9200521 C-A Hetero INTERGENIC
SBS Chr10 18513360 T-C Homo INTRON
SBS Chr11 1703002 G-A Hetero INTERGENIC
SBS Chr11 6975442 A-T Hetero INTERGENIC
SBS Chr11 25644187 C-T Homo INTERGENIC
SBS Chr12 3817676 G-A Hetero INTRON
SBS Chr12 6254971 T-C Hetero INTERGENIC
SBS Chr12 26826734 C-A Hetero INTERGENIC

Deletions: 34

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 440209 440215 6
Deletion Chr4 457015 457017 2
Deletion Chr5 1250440 1250441 1
Deletion Chr3 2574476 2574477 1
Deletion Chr5 4524390 4524391 1
Deletion Chr12 4614848 4614862 14
Deletion Chr2 4866683 4866695 12 OsKitaake02g067100
Deletion Chr8 6002673 6002675 2
Deletion Chr4 6707701 6707709 8
Deletion Chr9 6735454 6735457 3
Deletion Chr3 7116052 7116062 10
Deletion Chr12 9325772 9325780 8
Deletion Chr4 11233630 11233648 18
Deletion Chr2 11771552 11771555 3
Deletion Chr5 13080657 13080662 5
Deletion Chr11 13111605 13111614 9
Deletion Chr8 14080102 14080116 14
Deletion Chr8 14624072 14624075 3
Deletion Chr2 15647175 15647180 5
Deletion Chr10 18200711 18200715 4
Deletion Chr10 18566977 18566986 9
Deletion Chr3 20667383 20667394 11
Deletion Chr6 21504765 21504777 12
Deletion Chr6 23281822 23281832 10 OsKitaake06g205100
Deletion Chr1 24253453 24253464 11
Deletion Chr1 24472654 24472662 8
Deletion Chr3 26083467 26083468 1
Deletion Chr1 26296417 26296428 11
Deletion Chr4 30510443 30510446 3
Deletion Chr1 30916683 30916684 1
Deletion Chr3 31297092 31297097 5
Deletion Chr3 33913705 33913712 7
Deletion Chr2 35436610 35436617 7
Deletion Chr2 35910274 35910284 10

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 25537567 25537572 4
Insertion Chr1 43984325 43984328 2
Insertion Chr3 108746 108749 2
Insertion Chr11 20594095 20594102 6
Insertion Chr12 11747333 11747340 6
Insertion Chr12 25899502 25899505 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8125979	C-G	Hetero	INTRON
SBS	Chr1	9147346	A-C	Hetero	INTERGENIC
SBS	Chr1	13409159	G-C	Homo	INTERGENIC
SBS	Chr1	16230736	T-C	Hetero	INTERGENIC
SBS	Chr1	16834433	A-C	Hetero	INTERGENIC
SBS	Chr1	26296439	G-A	Hetero	INTERGENIC
SBS	Chr1	44269096	C-G	Hetero	INTERGENIC
SBS	Chr2	78941	T-C	Homo	UTR_3_PRIME
SBS	Chr2	1311666	A-T	Hetero	UTR_3_PRIME
SBS	Chr2	2461639	C-T	Hetero	INTERGENIC
SBS	Chr2	4864804	T-A	Hetero	INTERGENIC
SBS	Chr2	6961622	C-G	Hetero	INTERGENIC
SBS	Chr2	7747389	C-T	Hetero	INTERGENIC
SBS	Chr2	12470260	T-C	Hetero	INTERGENIC
SBS	Chr2	31126006	G-T	Homo	INTRON
SBS	Chr2	33046529	G-A	Homo	INTERGENIC
SBS	Chr3	19899728	C-T	Hetero	INTERGENIC
SBS	Chr3	35293306	G-A	Hetero	INTRON
SBS	Chr3	35349745	C-T	Hetero	INTERGENIC
SBS	Chr4	16333773	G-A	Hetero	INTERGENIC
SBS	Chr5	14528	G-C	Hetero	INTERGENIC
SBS	Chr5	7832469	C-T	Hetero	INTERGENIC
SBS	Chr5	20504852	C-T	Hetero	INTERGENIC
SBS	Chr5	25015422	C-A	Hetero	INTERGENIC
SBS	Chr6	12284658	A-T	Hetero	INTERGENIC
SBS	Chr6	18223693	C-T	Hetero	INTERGENIC
SBS	Chr7	16572622	G-A	Hetero	INTERGENIC
SBS	Chr7	20523758	A-C	Hetero	INTERGENIC
SBS	Chr8	639513	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr8	11002668	C-T	Hetero	INTERGENIC
SBS	Chr8	12980981	G-A	Hetero	INTERGENIC
SBS	Chr9	11310234	A-G	Hetero	INTERGENIC
SBS	Chr9	15454383	G-A	Hetero	INTRON
SBS	Chr10	7300885	C-A	Homo	INTERGENIC
SBS	Chr10	8727865	G-T	Hetero	INTERGENIC
SBS	Chr10	9200521	C-A	Hetero	INTERGENIC
SBS	Chr10	18513360	T-C	Homo	INTRON
SBS	Chr11	1703002	G-A	Hetero	INTERGENIC
SBS	Chr11	6975442	A-T	Hetero	INTERGENIC
SBS	Chr11	25644187	C-T	Homo	INTERGENIC
SBS	Chr12	3817676	G-A	Hetero	INTRON
SBS	Chr12	6254971	T-C	Hetero	INTERGENIC
SBS	Chr12	26826734	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	440209	440215	6
Deletion	Chr4	457015	457017	2
Deletion	Chr5	1250440	1250441	1
Deletion	Chr3	2574476	2574477	1
Deletion	Chr5	4524390	4524391	1
Deletion	Chr12	4614848	4614862	14
Deletion	Chr2	4866683	4866695	12	OsKitaake02g067100
Deletion	Chr8	6002673	6002675	2
Deletion	Chr4	6707701	6707709	8
Deletion	Chr9	6735454	6735457	3
Deletion	Chr3	7116052	7116062	10
Deletion	Chr12	9325772	9325780	8
Deletion	Chr4	11233630	11233648	18
Deletion	Chr2	11771552	11771555	3
Deletion	Chr5	13080657	13080662	5
Deletion	Chr11	13111605	13111614	9
Deletion	Chr8	14080102	14080116	14
Deletion	Chr8	14624072	14624075	3
Deletion	Chr2	15647175	15647180	5
Deletion	Chr10	18200711	18200715	4
Deletion	Chr10	18566977	18566986	9
Deletion	Chr3	20667383	20667394	11
Deletion	Chr6	21504765	21504777	12
Deletion	Chr6	23281822	23281832	10	OsKitaake06g205100
Deletion	Chr1	24253453	24253464	11
Deletion	Chr1	24472654	24472662	8
Deletion	Chr3	26083467	26083468	1
Deletion	Chr1	26296417	26296428	11
Deletion	Chr4	30510443	30510446	3
Deletion	Chr1	30916683	30916684	1
Deletion	Chr3	31297092	31297097	5
Deletion	Chr3	33913705	33913712	7
Deletion	Chr2	35436610	35436617	7
Deletion	Chr2	35910274	35910284	10

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes