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Mutant Information

Mutant Name	FN2184-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2184-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 25

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13248766 T-G Homo INTERGENIC
SBS Chr2 3950551 T-C Hetero INTERGENIC
SBS Chr2 6936841 G-A Hetero INTERGENIC
SBS Chr2 9696239 A-C Hetero SYNONYMOUS_CODING
SBS Chr2 18557216 G-A Hetero INTERGENIC
SBS Chr3 1620883 C-T Hetero INTRON
SBS Chr3 13524289 A-T Hetero INTERGENIC
SBS Chr4 3853429 A-T Hetero INTERGENIC
SBS Chr4 6803212 T-C Hetero INTERGENIC
SBS Chr4 14411258 A-G Hetero INTERGENIC
SBS Chr4 24896053 T-C Hetero INTERGENIC
SBS Chr5 19484743 C-T Hetero INTERGENIC
SBS Chr6 8669138 G-A Hetero INTERGENIC
SBS Chr6 18744274 C-T Hetero INTERGENIC
SBS Chr6 20778222 A-G Homo INTRON
SBS Chr6 24969558 G-A Hetero INTERGENIC
SBS Chr7 9016065 G-T Homo INTERGENIC
SBS Chr7 14962411 C-G Homo INTERGENIC
SBS Chr7 17772176 C-T Homo INTERGENIC
SBS Chr8 23797300 G-A Hetero INTERGENIC
SBS Chr9 9622489 C-A Hetero INTERGENIC
SBS Chr9 9693238 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g058900
SBS Chr10 5038795 A-T Homo INTERGENIC
SBS Chr12 16361068 C-T Hetero INTERGENIC
SBS Chr12 20775053 T-C Hetero INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 1643343 1643345 2
Deletion Chr5 2404465 2404466 1
Deletion Chr7 9394491 9394498 7
Deletion Chr7 12323436 12323437 1
Deletion Chr2 16841767 16841768 1
Deletion Chr5 21833116 21833118 2
Deletion Chr5 23258415 23258432 17
Deletion Chr6 24825001 25045000 219999 14
Deletion Chr3 35090161 35090341 180

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 3076175 3076178 2
Insertion Chr3 4607924 4607927 2
Insertion Chr11 2611682 2611685 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 15129177 15292851
Inversion Chr7 15129183 15292853
Inversion Chr6 24498495 24826752

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13248766	T-G	Homo	INTERGENIC
SBS	Chr2	3950551	T-C	Hetero	INTERGENIC
SBS	Chr2	6936841	G-A	Hetero	INTERGENIC
SBS	Chr2	9696239	A-C	Hetero	SYNONYMOUS_CODING
SBS	Chr2	18557216	G-A	Hetero	INTERGENIC
SBS	Chr3	1620883	C-T	Hetero	INTRON
SBS	Chr3	13524289	A-T	Hetero	INTERGENIC
SBS	Chr4	3853429	A-T	Hetero	INTERGENIC
SBS	Chr4	6803212	T-C	Hetero	INTERGENIC
SBS	Chr4	14411258	A-G	Hetero	INTERGENIC
SBS	Chr4	24896053	T-C	Hetero	INTERGENIC
SBS	Chr5	19484743	C-T	Hetero	INTERGENIC
SBS	Chr6	8669138	G-A	Hetero	INTERGENIC
SBS	Chr6	18744274	C-T	Hetero	INTERGENIC
SBS	Chr6	20778222	A-G	Homo	INTRON
SBS	Chr6	24969558	G-A	Hetero	INTERGENIC
SBS	Chr7	9016065	G-T	Homo	INTERGENIC
SBS	Chr7	14962411	C-G	Homo	INTERGENIC
SBS	Chr7	17772176	C-T	Homo	INTERGENIC
SBS	Chr8	23797300	G-A	Hetero	INTERGENIC
SBS	Chr9	9622489	C-A	Hetero	INTERGENIC
SBS	Chr9	9693238	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g058900
SBS	Chr10	5038795	A-T	Homo	INTERGENIC
SBS	Chr12	16361068	C-T	Hetero	INTERGENIC
SBS	Chr12	20775053	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	1643343	1643345	2
Deletion	Chr5	2404465	2404466	1
Deletion	Chr7	9394491	9394498	7
Deletion	Chr7	12323436	12323437	1
Deletion	Chr2	16841767	16841768	1
Deletion	Chr5	21833116	21833118	2
Deletion	Chr5	23258415	23258432	17
Deletion	Chr6	24825001	25045000	219999	14
Deletion	Chr3	35090161	35090341	180

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	15129177	15292851
Inversion	Chr7	15129183	15292853
Inversion	Chr6	24498495	24826752

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes