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Mutant Information

Mutant Name	FN2185-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2185-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10973180 C-T Hetero INTERGENIC
SBS Chr2 5212714 C-T Hetero INTERGENIC
SBS Chr2 10859948 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g127200
SBS Chr2 14437189 A-T Hetero INTERGENIC
SBS Chr2 21592337 T-G Hetero INTRON
SBS Chr2 22905679 C-A Hetero INTERGENIC
SBS Chr3 7820272 T-A Homo INTERGENIC
SBS Chr3 12869954 T-C Hetero INTERGENIC
SBS Chr3 14070003 C-T Hetero INTERGENIC
SBS Chr4 7492761 C-T Hetero INTERGENIC
SBS Chr4 24923132 C-T Hetero INTERGENIC
SBS Chr4 34706850 A-G Hetero INTERGENIC
SBS Chr5 9723216 A-T Hetero INTERGENIC
SBS Chr5 10376869 A-G Hetero INTERGENIC
SBS Chr5 12417390 A-T Hetero INTERGENIC
SBS Chr6 1075328 G-A Homo NON_SYNONYMOUS_CODING OsKitaake06g012000
SBS Chr6 3628045 T-A Homo INTERGENIC
SBS Chr6 10833133 A-T Homo INTERGENIC
SBS Chr6 12596775 C-T Hetero INTERGENIC
SBS Chr6 17293301 C-T Homo INTERGENIC
SBS Chr7 27253669 C-T Hetero INTERGENIC
SBS Chr7 27721892 G-A Hetero INTERGENIC
SBS Chr8 4858579 G-T Hetero INTERGENIC
SBS Chr8 23265266 C-G Hetero INTRON
SBS Chr8 25840566 C-T Hetero INTERGENIC
SBS Chr9 8155917 C-T Hetero INTERGENIC
SBS Chr9 19397959 T-C Homo INTERGENIC
SBS Chr9 21106705 C-T Hetero INTERGENIC
SBS Chr10 14914664 C-T Hetero INTERGENIC
SBS Chr11 21709927 C-T Hetero INTERGENIC
SBS Chr11 23355933 G-A Hetero INTERGENIC
SBS Chr12 3349303 A-G Hetero INTERGENIC
SBS Chr12 5420529 C-A Hetero INTERGENIC
SBS Chr12 8618003 G-C Hetero INTERGENIC
SBS Chr12 10433076 G-A Hetero INTERGENIC
SBS Chr12 23467427 C-T Hetero UTR_5_PRIME
SBS Chr12 25335172 T-A Hetero INTRON

Deletions: 25

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 811482 811487 5
Deletion Chr2 3393299 3393310 11
Deletion Chr5 3817622 3817623 1
Deletion Chr8 3951001 3980000 28999 3
Deletion Chr4 6348124 6348127 3
Deletion Chr3 7565367 7565376 9
Deletion Chr3 7573611 7573614 3
Deletion Chr1 7894936 7894938 2
Deletion Chr1 8099177 8099180 3
Deletion Chr8 11706520 11706527 7
Deletion Chr6 14588740 14588743 3
Deletion Chr6 15949152 15949156 4
Deletion Chr2 16088924 16088928 4
Deletion Chr5 16371250 16371257 7
Deletion Chr1 17638355 17638364 9 OsKitaake01g180000
Deletion Chr7 21290206 21290213 7 OsKitaake07g176500
Deletion Chr3 21607651 21607656 5
Deletion Chr7 22704333 22704337 4
Deletion Chr8 23027518 23027521 3
Deletion Chr7 23785972 23785975 3 OsKitaake07g209200
Deletion Chr12 24376661 24376667 6
Deletion Chr12 24744733 24744744 11
Deletion Chr4 32708100 32708106 6
Deletion Chr3 34309530 34309533 3
Deletion Chr1 35162692 35162696 4 OsKitaake01g371000

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 24990079 24990086 6
Insertion Chr6 4189140 4189143 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 20992162 21085531 OsKitaake02g203100
Inversion Chr2 20992167 21085533 OsKitaake02g203100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10973180	C-T	Hetero	INTERGENIC
SBS	Chr2	5212714	C-T	Hetero	INTERGENIC
SBS	Chr2	10859948	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g127200
SBS	Chr2	14437189	A-T	Hetero	INTERGENIC
SBS	Chr2	21592337	T-G	Hetero	INTRON
SBS	Chr2	22905679	C-A	Hetero	INTERGENIC
SBS	Chr3	7820272	T-A	Homo	INTERGENIC
SBS	Chr3	12869954	T-C	Hetero	INTERGENIC
SBS	Chr3	14070003	C-T	Hetero	INTERGENIC
SBS	Chr4	7492761	C-T	Hetero	INTERGENIC
SBS	Chr4	24923132	C-T	Hetero	INTERGENIC
SBS	Chr4	34706850	A-G	Hetero	INTERGENIC
SBS	Chr5	9723216	A-T	Hetero	INTERGENIC
SBS	Chr5	10376869	A-G	Hetero	INTERGENIC
SBS	Chr5	12417390	A-T	Hetero	INTERGENIC
SBS	Chr6	1075328	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g012000
SBS	Chr6	3628045	T-A	Homo	INTERGENIC
SBS	Chr6	10833133	A-T	Homo	INTERGENIC
SBS	Chr6	12596775	C-T	Hetero	INTERGENIC
SBS	Chr6	17293301	C-T	Homo	INTERGENIC
SBS	Chr7	27253669	C-T	Hetero	INTERGENIC
SBS	Chr7	27721892	G-A	Hetero	INTERGENIC
SBS	Chr8	4858579	G-T	Hetero	INTERGENIC
SBS	Chr8	23265266	C-G	Hetero	INTRON
SBS	Chr8	25840566	C-T	Hetero	INTERGENIC
SBS	Chr9	8155917	C-T	Hetero	INTERGENIC
SBS	Chr9	19397959	T-C	Homo	INTERGENIC
SBS	Chr9	21106705	C-T	Hetero	INTERGENIC
SBS	Chr10	14914664	C-T	Hetero	INTERGENIC
SBS	Chr11	21709927	C-T	Hetero	INTERGENIC
SBS	Chr11	23355933	G-A	Hetero	INTERGENIC
SBS	Chr12	3349303	A-G	Hetero	INTERGENIC
SBS	Chr12	5420529	C-A	Hetero	INTERGENIC
SBS	Chr12	8618003	G-C	Hetero	INTERGENIC
SBS	Chr12	10433076	G-A	Hetero	INTERGENIC
SBS	Chr12	23467427	C-T	Hetero	UTR_5_PRIME
SBS	Chr12	25335172	T-A	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	811482	811487	5
Deletion	Chr2	3393299	3393310	11
Deletion	Chr5	3817622	3817623	1
Deletion	Chr8	3951001	3980000	28999	3
Deletion	Chr4	6348124	6348127	3
Deletion	Chr3	7565367	7565376	9
Deletion	Chr3	7573611	7573614	3
Deletion	Chr1	7894936	7894938	2
Deletion	Chr1	8099177	8099180	3
Deletion	Chr8	11706520	11706527	7
Deletion	Chr6	14588740	14588743	3
Deletion	Chr6	15949152	15949156	4
Deletion	Chr2	16088924	16088928	4
Deletion	Chr5	16371250	16371257	7
Deletion	Chr1	17638355	17638364	9	OsKitaake01g180000
Deletion	Chr7	21290206	21290213	7	OsKitaake07g176500
Deletion	Chr3	21607651	21607656	5
Deletion	Chr7	22704333	22704337	4
Deletion	Chr8	23027518	23027521	3
Deletion	Chr7	23785972	23785975	3	OsKitaake07g209200
Deletion	Chr12	24376661	24376667	6
Deletion	Chr12	24744733	24744744	11
Deletion	Chr4	32708100	32708106	6
Deletion	Chr3	34309530	34309533	3
Deletion	Chr1	35162692	35162696	4	OsKitaake01g371000

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	20992162	21085531	OsKitaake02g203100
Inversion	Chr2	20992167	21085533	OsKitaake02g203100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes