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| Mutant Information |
|---|
| Mutant Name | FN2187-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2187-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
|
| Variant Information |
|---|
Single base substitutions: 21
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 10868302 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 19602366 | A-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 26414634 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 31973892 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 5059844 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 11700935 | A-G | Homo | UTR_3_PRIME | |
| SBS | Chr6 | 23778787 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr6 | 25238618 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 22612321 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 28154045 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 25736689 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 28635906 | A-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 1350950 | C-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 21255543 | T-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 22411158 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 1963501 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 8366730 | A-G | Homo | INTERGENIC | |
| SBS | Chr10 | 13515595 | A-T | Homo | INTERGENIC | |
| SBS | Chr10 | 21542249 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 12371985 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 16714945 | C-A | Homo | INTERGENIC |
Deletions: 8
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr7 | 1080951 | 1080952 | 1 | |
| Deletion | Chr12 | 13152424 | 13152432 | 8 | |
| Deletion | Chr7 | 18077303 | 18077306 | 3 | |
| Deletion | Chr1 | 24658172 | 24658175 | 3 | |
| Deletion | Chr5 | 25213680 | 25213683 | 3 | |
| Deletion | Chr12 | 26416853 | 26416854 | 1 | |
| Deletion | Chr5 | 30260793 | 30261143 | 350 | |
| Deletion | Chr4 | 33448263 | 33448264 | 1 | OsKitaake04g275000 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 22065138 | 22065141 | 2 | |
| Insertion | Chr3 | 28689680 | 28689683 | 2 | |
| Insertion | Chr5 | 15149474 | 15149478 | 3 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr4 | 14369238 | 14510540 | |
| Inversion | Chr4 | 14369242 | 14510750 | OsKitaake04g068650 |
| Inversion | Chr11 | 22202574 | 22249171 | OsKitaake11g176100 |
| Inversion | Chr11 | 22202575 | 22249176 | OsKitaake11g176100 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 13707404 | Chr4 | 14510750 | OsKitaake04g068650 |
| Translocation | Chr11 | 13707407 | Chr4 | 14510541 |